Publications

Written and oral

This is a (hopefully!) complete record of my scientific production. Every paper, poster, deck of slides, etc. that is in my possession is downloadable here as a PDF file.

Journal articles

  • Beck M, Cailleton C, Guidi L, Desnos C, Jalabert L, Elineau A, Stemmann L, Ayata S-D, Irisson J-O (2023). Morphological diversity increases with decreasing resources along a zooplankton time series. Proc R Soc B 290:20232109. 10.1098/rspb.2023.2109 [PDF]
  • Rubbens P, Brodie S, Cordier T, Destro Barcellos D, Devos P, Fernandes-Salvador JA, Fincham JI, Gomes A, Handegard NO, Howell K, Jamet C, Kartveit KH, Moustahfid H, Parcerisas C, Politikos D, Sauzède R, Sokolova M, Uusitalo L, Van den Bulcke L, van Helmond ATM, Watson JT, Welch H, Beltran-Perez O, Chaffron S, Greenberg DS, Kühn B, Kiko R, Lo M, Lopes RM, Möller KO, Michaels W, Pala A, Romagnan J-B, Schuchert P, Seydi V, Villasante S, Malde K, Irisson J-O (2023). Machine learning in marine ecology: an overview of techniques and applications. ICES Journal of Marine Science:fsad100. 10.1093/icesjms/fsad100 [PDF]
  • Fabri-Ruiz S, Baudena A, Moullec F, Lombard F, Irisson J-O, Pedrotti ML (2023). Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea. Science of The Total Environment 856:159011. 10.1016/j.scitotenv.2022.159011 [PDF]
  • Panaïotis T, Babin M, Biard T, Carlotti F, Coppola L, Guidi L, Hauss H, Karp‐Boss L, Kiko R, Lombard F, McDonnell AMP, Picheral M, Rogge A, Waite AM, Stemmann L, Irisson J (2023). Three major mesoplanktonic communities resolved by in situ imaging in the upper 500 m of the global ocean. Global Ecol Biogeogr 32:1991–2005. 10.1111/geb.13741 [PDF]
  • Dugenne M, Corrales-Ugalde M, Luo J, Kiko R, O’Brien T, Irisson J-O, Lombard F, Stemmann L, Stock C, Anderson CR (2023). First release of the Pelagic Size Structure database: Global datasets of marine size spectra obtained from plankton imaging devices. Earth System Science Data Discussions 2023:1–41.
  • Berenshtein I, Faillettaz R, Irisson J-O, Kiflawi M, Siebeck UE, Leis JM, Paris CB (2022). Evidence for a consistent use of external cues by marine fish larvae for orientation. Commun Biol 5:1–9. 10.1038/s42003-022-04137-7 [PDF]
  • Kiko R, Picheral M, Antoine D, Babin M, Berline L, Biard T, Boss E, Brandt P, Carlotti F, Christiansen S, Coppola L, de la Cruz L, Diamond-Riquier E, Durrieu de Madron X, Elineau A, Gorsky G, Guidi L, Hauss H, Irisson J-O, Karp-Boss L, Karstensen J, Kim D, Lekanoff RM, Lombard F, Lopes RM, Marec C, McDonnell AMP, Niemeyer D, Noyon M, O’Daly SH, Ohman M, Pretty JL, Rogge A, Searson S, Shibata M, Tanaka Y, Tanhua T, Taucher J, Trudnowska E, Turner JS, Waite A, Stemmann L (2022). A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5. Earth System Science Data Discussions 14:4315–4337. 10.5194/essd-2022-51 [PDF]
  • Soviadan YD, Benedetti F, Brandão MC, Ayata S-D, Irisson J-O, Jamet JL, Kiko R, Lombard F, Gnandi K, Stemmann L (2022). Patterns of mesozooplankton community composition and vertical fluxes in the global ocean. Progress in Oceanography 200:102717. 10.1016/j.pocean.2021.102717 [PDF]
  • Picheral M, Catalano C, Brousseau D, Claustre H, Coppola L, Leymarie E, Coindat J, Dias F, Fevre S, Guidi L, Irisson J-O, Legendre L, Lombard F, Mortier L, Penkerch C, Rogge A, Schmechtig C, Thibault S, Tixier T, Waite A, Stemmann L (2022). The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms. Limnology & Ocean Methods 20:115–129. 10.1002/lom3.10475 [PDF]
  • Drago L, Panaïotis T, Irisson J-O, Babin M, Biard T, Carlotti F, Coppola L, Guidi L, Hauss H, Karp-Boss L, Lombard F, McDonnell AMP, Picheral M, Rogge A, Waite AM, Stemmann L, Kiko R (2022). Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning. Frontiers in Marine Science 9. 10.3389/fmars.2022.894372 [PDF]
  • Pierella Karlusich JJ, Lombard F, Irisson J-O, Bowler C, Foster RA (2022). Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions. Frontiers in Marine Science 9. 10.3389/fmars.2022.878803 [PDF]
  • Panaïotis T, Caray–Counil L, Woodward B, Schmid MS, Daprano D, Tsai ST, Sullivan CM, Cowen RK, Irisson J-O (2022). Content-Aware Segmentation of Objects Spanning a Large Size Range: Application to Plankton Images. Frontiers in Marine Science 9. 10.3389/fmars.2022.870005 [PDF]
  • Irisson J-O, Ayata S-D, Lindsay DJ, Karp-Boss L, Stemmann L (2022). Machine Learning for the Study of Plankton and Marine Snow from Images. Annual Review of Marine Science 14:277–301. 10.1146/annurev-marine-041921-013023 [PDF]
  • Orenstein EC, Ayata S-D, Maps F, Becker ÉC, Benedetti F, Biard T, de Garidel-Thoron T, Ellen JS, Ferrario F, Giering SLC, Guy-Haim T, Hoebeke L, Iversen MH, Kiørboe T, Lalonde J-F, Lana A, Laviale M, Lombard F, Lorimer T, Martini S, Meyer A, Möller KO, Niehoff B, Ohman MD, Pradalier C, Romagnan J-B, Schröder S-M, Sonnet V, Sosik HM, Stemmann LS, Stock M, Terbiyik-Kurt T, Valcárcel-Pérez N, Vilgrain L, Wacquet G, Waite AM, Irisson J-O (2022). Machine learning techniques to characterize functional traits of plankton from image data. Limnology and Oceanography 67:1647–1669. 10.1002/lno.12101 [PDF]
  • Dubois C, Irisson J-O, Debreuve E (2022). Correcting estimations of copepod volume from two-dimensional images. Limnology and Oceanography: Methods 20:361–371. 10.1002/lom3.10492 [PDF]
  • Feuilloley G, Fromentin J-M, Saraux C, Irisson J-O, Jalabert L, Stemmann L (2021). Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea. ICES Journal of Marine Science. 10.1093/icesjms/fsab190 [PDF]
  • Brandão MC, Benedetti F, Martini S, Soviadan YD, Irisson J-O, Romagnan J-B, Elineau A, Desnos C, Jalabert L, Freire AS, Picheral M, Guidi L, Gorsky G, Bowler C, Karp-Boss L, Henry N, de Vargas C, Sullivan MB, Stemmann L, Lombard F (2021). Macroscale patterns of oceanic zooplankton composition and size structure. Sci Rep 11:15714. 10.1038/s41598-021-94615-5 [PDF]
  • Trudnowska E, Lacour L, Ardyna M, Rogge A, Irisson J-O, Waite AM, Stemmann L (2021). Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export. Nature Communications 12. 10.1038/s41467-021-22994-4 [PDF]
  • Gazeau F, Ridame C, Van Wambeke F, Alliouane S, Stolpe C, Irisson J-O, Marro S, Grisoni J-M, De Liège G, Nunige S (2021). Impact of dust addition on Mediterranean plankton communities under present and future conditions of pH and temperature: an experimental overview. Biogeosciences 18:5011–5034. 10.5194/bg-18-5011-2021
  • Vilgrain L, Maps F, Picheral M, Babin M, Aubry C, Irisson J-O, Ayata S-D (2021). Trait-based approach using in situ copepod images reveals contrasting ecological patterns across an Arctic ice melt zone. Limnology and Oceanography 66:1155–1167. 10.1002/lno.11672 [PDF]
  • Giering SLC, Cavan EL, Basedow SL, Briggs N, Burd AB, Darroch LJ, Guidi L, Irisson J-O, Iversen MH, Kiko R, Lindsay D, Marcolin CR, McDonnell AMP, Möller KO, Passow U, Thomalla S, Trull TW, Waite AM (2020). Sinking Organic Particles in the Ocean—Flux Estimates From in situ Optical Devices. Front Mar Sci 6. 10.3389/fmars.2019.00834 [PDF]
  • Faillettaz R, Voué R, Crec’hriou R, Garsi L-H, Lecaillon G, Agostini S, Lenfant P, Irisson J-O (2020). Spatio-temporal patterns of larval fish settlement in the northwestern Mediterranean Sea. Mar Ecol Prog Ser 650:153–173. 10.3354/meps13191 [PDF]
  • Schröder S-M, Kiko R, Irisson J-O, Koch R (2019). Low-shot learning of plankton categories. GCPR 2018 Lecture Notes in Computer Science 11269. 10.1007/978-3-030-12939-2_27 [PDF]
  • Rossi A, Irisson J-O, Levaray M, Pasqualini V, Agostini S (2019). Orientation of Mediterranean fish larvae varies with location. Marine Biology 166:100. 10.1007/s00227-019-3548-7 [PDF]
  • Lombard F, Boss E, Waite AM, Vogt M, Uitz J, Stemmann L, Sosik HM, Schulz J, Romagnan J-B, Picheral M, Pearlman J, Ohman MD, Niehoff B, Möller KO, Miloslavich P, Lara-Lpez A, Kudela R, Lopes RM, Kiko R, Karp-Boss L, Jaffe JS, Iversen MH, Irisson J-O, Fennel K, Hauss H, Guidi L, Gorsky G, Giering SLC, Gaube P, Gallager S, Dubelaar G, Cowen RK, Carlotti F, Briseño-Avena C, Berline L, Benoit-Bird K, Bax N, Batten S, Ayata SD, Artigas LF, Appeltans W (2019). Globally consistent quantitative observations of planktonic ecosystems. Frontiers in Marine Science 6. 10.3389/fmars.2019.00196 [PDF]
  • Benedetti F, Ayata S-D, Irisson J-O, Adloff F, Guilhaumon F (2019). Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea. Diversity and Distributions 25:568–581. 10.1111/ddi.12857 [PDF]
  • Benedetti F, Jalabert L, Sourisseau M, Beker B, Cailliau C, Desnos C, Elineau A, Irisson J-O, Lombard F, Picheral M, Stemmann L, Pouline P (2019). The seasonal and inter-annual fluctuations of plankton abundance and community structure in a North Atlantic Marine Protected Area. Frontiers in Marine Science 6:214. 10.3389/fmars.2019.00214 [PDF]
  • Luo JY, Irisson J-O, Graham B, Guigand C, Sarafraz A, Mader C, Cowen RK (2018). Automated plankton image analysis using convolutional neural networks. Limnology and Oceanography: Methods 16:814–827. 10.1002/lom3.10285 [PDF]
  • Ayata S-D, Irisson J-O, Berline L, Dutay J-C, Mayot N, Nieblas A-E, D’Ortenzio F, Palmiéri J, Reygondeau G, Rossi V, Guieu C (2018). Regionalisation of the Mediterranean basin, a MERMEX synthesis. Progress in Oceanography 163:7–20. 10.1016/j.pocean.2017.09.016 [PDF]
  • Faillettaz R, Durand E, Paris CB, Koubbi P, Irisson J-O (2018). Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort’s aberrant drift hypothesis. Limnology and Oceanography 63:509–523. 10.1002/lno.10643 [PDF]
  • Gattuso J-P, Magnan AK, Bopp L, Cheung WWL, Duarte CM, Hinkel J, Mcleod E, Micheli F, Oschlies A, Williamson P, Billé R, Chalastani V, Gates RD, Irisson J-O, Middelburg JJ, Poertner HO, Rau G (2018). Ocean solutions to address climate change and its effects on marine ecosystems. Frontiers in Marine Science 5:337. 10.3389/fmars.2018.00337 [PDF]
  • Faillettaz R, Gilletta L, Petit F, Francour P, Irisson J-O (2018). First records of dusky grouper Epinephelus marginatus settlement-stage larvae in the Ligurian Sea. Journal of Oceanography, Research and Data 10. [PDF]
  • Faillettaz R, Paris CB, Irisson J-O (2018). Larval fish swimming behavior alters dispersal patterns from marine protected areas in the north-western Mediterranean Sea. Frontiers in Marine Science 5:97. 10.3389/fmars.2018.00097 [PDF]
  • Reygondeau G, Guieu C, Benedetti F, Irisson J-O, Ayata S-D, Gasparini S, Koubbi P (2017). Biogeochemical regions of the Mediterranean Sea: An objective multidimensional and multivariate environmental approach. Progress in Oceanography 151:138–148. 10.1016/j.pocean.2016.11.001 [PDF]
  • Chust G, Vogt M, Benedetti F, Nakov T, Villéger S, Aubert A, Vallina SM, Righetti D, Not F, Biard T, Bittner L, Benoiston A-S, Guidi L, Villarino E, Gaborit C, Cornils A, Buttay L, Irisson J-O, Chiarello M, Vallim AL, Blanco-Bercial L, Basconi L, Ayata S-D (2017). Mare incognitum: A glimpse into future plankton diversity and ecology research. Frontiers in Marine Science 4. 10.3389/fmars.2017.00068 [PDF]
  • Jean M, Irisson J-O, Gras G, Bouchand F, Simo D, Duran C, Perronne C, Mulleman D, Bernard L, Dinh A (2017). Diagnostic delay of pyogenic vertebral osteomyelitis and its associated factors. Scandinavian Journal of Rheumatology 46:64–68. 10.3109/03009742.2016.1158314 [PDF]
  • Ezzat L, Towle E, Irisson J-O, Langdon C, Ferrier-Pagès C (2016). The relationship between heterotrophic feeding and inorganic nutrient availability in the scleractinian coral T. reniformis under a short-term temperature increase. Limnology and Oceanography 61:89–102. 10.1002/lno.10200 [PDF]
  • Faillettaz R, Picheral M, Luo JY, Guigand C, Cowen RK, Irisson J-O (2016). Imperfect automatic image classification successfully describes plankton distribution patterns. Methods in Oceanography 15–16:60–77. 10.1016/j.mio.2016.04.003 [PDF]
  • Howes EL, Stemmann L, Assailly C, Irisson J-O, Dima M, Bijma J, Gattuso J-P (2015). Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability. Marine Ecology Progress Series 531:193–206. 10.3354/meps11322 [PDF]
  • Crise A, Kaberi H, Ruiz J, Zatsepin A, Arashkevich E, Giani M, Karageorgis AP, Prieto L, Pantazi M, Gonzalez-Fernandez D, Ribera d’Alcalà, Tornero V, Vassilopoulou V, Durrieu de, Guieu C, Puig P, Zenetos A, Andral B, Angel D, Altukhov D, Ayata S-D, Aktan Y, Balcıoğlu E, Benedetti F, Bouchoucha M, Buia MC, Cadiou JF, Canals M, Chakroun M, Christou ED, Christidis MG, Civitarese G, Coatu V, Corsini-Foka M, Cozzi S, Deidun A, Dell’Aquila A, Dogrammatzi A, Dumitrache C, Edelist D, Ettahiri O, Fonda-Umani S, Gana S, Galgani F, Gasparini S, Giannakourou A, Gomoiu M-T, Gubanova A, Gücü A-C, Gürses Ö, Hanke G, Hatzianestis I, Herut B, Hone R, Huertas E, Irisson J-O, İşinibilir M, Jimenez JA, Kalogirou S, Kapiris K, Karamfilov V, Kavadas S, Keskin Ç, Kideyş AE, Kocak M, Kondylatos G, Kontogiannis C, Kosyan R, Koubbi P, Kuspilic G, La F, Langone L, Laroche S, Lazar L, Lefkaditou E, Lemeshko IE, Machias A, Malej A, Mazzocchi MG, Medinets V, Mihalopoulos N, Miserocchi S, Moncheva S, Mukhanov V, Oaie G, Oros A, Öztürk AA, Öztürk B, Panayotova M, Prospathopoulos A, Radu G, Raykov V, Reglero P, Reygondeau G, Rougeron N, Salihoglu B, Sanchez-Vidal A, Sannino G, Santinelli C, Secrieru D, Shapiro G, Simboura N, Shiganova T, Sprovieri M, Stefanova K, Streftaris N, Tirelli V, Tom M, Topaloğlu B, Topçu NE, Tsagarakis K, Tsangaris C, Tserpes G, Tuğrul S, Uysal Z, Vasile D, Violaki K, Xu J, Yüksek A, Papathanassiou E (2015). A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience. Marine Pollution Bulletin 95:28–39. 10.1016/j.marpolbul.2015.03.024 [PDF]
  • Irisson J-O, Paris CB, Leis JM, Yerman MN (2015). With a little help from my friends: group orientation by larvae of a coral reef fish. PLoS ONE 10:e0144060. 10.1371/journal.pone.0144060 [PDF]
  • Sukhovich A, Bonnieux S, Hello Y, Irisson J-O, Simons FJ, Nolet G (2015). Seismic monitoring in the oceans by autonomous floats. Nature Communications 6:8027. 10.1038/ncomms9027 [PDF]
  • Faillettaz R, Blandin A, Paris CB, Koubbi P, Irisson J-O (2015). Sun-compass orientation in mediterranean fish larvae. PLoS ONE 10:e0135213. 10.1371/journal.pone.0135213 [PDF]
  • Luo JY, Grassian B, Tang D, Irisson J-O, Greer AT, Guigand CM, McClatchie S, Cowen RK (2014). Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front. Marine Ecology Progress Series 510:129–149. [PDF]
  • Leis JM, Paris CB, Irisson J-O, Yerman MN, Siebeck UE (2014). Orientation of fish larvae in situ is consistent among locations, years and methods, but varies with time of day. Marine Ecology Progress Series 505:193–208. 10.3354/meps10792 [PDF]
  • Sukhovich A, Irisson J-O, Perrot J, Nolet G (2014). Automatic recognition of T and teleseismic P waves by statistical analysis of their spectra: An application to continuous records of moored hydrophones. Journal of Geophysical Research: Solid Earth 119:6469–6485. 10.1002/2013JB010936 [PDF]
  • Giraldo C, Mayzaud P, Tavernier E, Irisson J-O, Penot F, Becciu J, Chartier A, Boutoute M, Koubbi P (2013). Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in East Antarctica. Marine Biology 160:877–887. 10.1007/s00227-012-2141-0 [PDF]
  • Paris CB, Atema J, Irisson J-O, Kingsford M, Gerlach G, Guigand CM (2013). Reef odor: a wake up call for navigation in reef fish larvae. PLoS ONE 8:e72808. 10.1371/journal.pone.0072808 [PDF]
  • Talec A, Philistin M, Ferey F, Walenta G, Irisson J-O, Bernard O, Sciandra A (2013). Effect of gaseous cement industry effluents on four species of microalgae. Bioresource Technology 143:353–359. [PDF]
  • Sukhovich A, Irisson J-O, Simons FJ, Ogé A, Hello Y, Deschamps A, Nolet G (2011). Automatic discrimination of underwater acoustic signals generated by teleseismic P-waves: A probabilistic approach. Geophysical Research Letters 38. 10.1029/2011GL048474 [PDF]
  • Lett C, Ayata S-D, Huret M, Irisson J-O (2010). Biophysical modelling to investigate the effects of climate change on marine populations dispersal and connectivity. Progress in Oceanography 87:106–112. 10.1016/j.pocean.2010.09.005 [PDF]
  • Irisson J-O, Paris C, Guigand C, Planes S (2010). Vertical distribution and ontogenetic ‘migration’ in coral reef fish larvae. Limnology and Oceanography 55:909–919. 10.4319/lo.2010.55.2.0909 [PDF]
  • Hubert N, Delrieu-Trottin E, Irisson JO, Meyer C, Planes S (2010). Identifying coral reef fish larvae through DNA barcoding: A test case with the families Acanthuridae and Holocentridae. Molecular Phylogenetics and Evolution 55:1195–1203. 10.1016/j.ympev.2010.02.023 [PDF]
  • Irisson J-O, Guigand C, Paris CB (2009). Detection and quantification of marine larvae orientation in the pelagic environment. Limnology and Oceanography: Methods 7:664–672. 10.4319/lom.2009.7.664 [PDF]
  • Irisson J-O, Lecchini D (2008). In situ observation of settlement behaviour in larvae of coral reef fishes at night. Journal of Fish Biology 72:2707–2713. 10.1111/j.1095-8649.2008.01868.x [PDF]
  • Irisson J-O, LeVan A, De Lara M, Planes S (2004). Strategies and trajectories of coral reef fish larvae optimizing self-recruitment. Journal of Theoretical Biology 227:205–218. 10.1016/j.jtbi.2003.10.016 [PDF]
  • Dercole F, Irisson J-O, Rinaldi S (2003). Bifurcation analysis of a prey predator coevolution model. SIAM Journal on Applied Mathemathics 63:1378–1391. 10.1137/S0036139902411612 [PDF]

Book chapters

  • Guidi L, Fernàndez-Guerra A, Canchaya C, Curry E, Foglini F, Irisson J-O, Malde K, Marshall CT, Obst M, Ribeiro RP (2020). Big data in marine science. In: Marine Board Future Science Brief. [PDF]
  • Irisson J-O, Mousseau L, Taupier-Letage I (2017). Les moyens d’observation en mer. In: Cahier thématique du groupe de travail ‘Mer et littoral’. GREC-PACA [PDF]
  • Mormède S, Irisson J-O, Raymond B (2014). Chapter 2.3 Distribution modelling. In: Biogeographic Atlas of the Southern Ocean. De Broyer C, Koubbi P, Griffiths HJ, Raymond B, Udekem d’Acoz C, et al (eds) Scientific Committee on Antarctic Research, Cambridge, p 27–29 [PDF]
  • Cuzin-Roudy J, Irisson J-O, Penot F, Kawaguchi S, Vallet C (2014). Chapter 6.9 Southern Ocean Euphausiids. In: Biogeographic Atlas of the Southern Ocean. De Broyer C, Koubbi P, Griffiths HJ, Raymond B, Udekem d’Acoz C, et al (eds) Scientific Committee on Antarctic Research, Cambridge, p 309–320 [PDF]
  • Duhamel G, Hulley P-A, Causse R, Koubbi P, Vacchi M, Pruvost P, Vigetta S, Irisson J-O, Mormede S, Belchier M, Dettai A, Detrich HW, Gutt J, Jones CD, Kock K-H, Lopez Abellan LJ, Van de Putte A (2014). Chapter 7 Biogeographic patterns of fish. In: Biogeographic Atlas of the Southern Ocean. De Broyer C, Koubbi P, Griffiths HJ, Raymond B, Udekem d’Acoz C, et al (eds) Scientific Committee on Antarctic Research, p 328–362 [PDF]
  • Irisson J-O, Leis JM, Paris CB, Browman H (2009). Biological processes: Behaviour and settlement. In: Manual of recommended practices for modelling physical-biological interactions during fish early life. North E, Gallego A, Petitgas P (eds) ICES Cooperative Research Report, p 42–59 [PDF]
  • Paris CB, Irisson J-O, Lacroix G, Fiksen Ø, Leis JM, Mullon C (2009). Application 2: Connectivity. In: Manual of recommended practices for modelling physical-biological interactions during fish early life. North E, Gallego A, Petitgas P (eds) ICES Cooperative Research Report, p 63–76 [PDF]

Conferences

  • Laget M, Drago L, Panaiotis T, Kiko R, Stemmann L, Rogge A, Llopis N, Leynaert A, Irisson J-O, Biard T (2024). In situ imaging highlight the important role of giant mesopelagic protists in the biogeochemical cycles of carbon and silicon.
  • Mowlem M, Abdi E, Abualhaija R, Alrefaey A, Arundell M, Briggs N, Bhuiyan W, Butement J, Cardwell CL, Carvalho F, Catalano C, Evans S, Forrester R, Giering S, Gizeli E, Glynne-Jones P, Guidi L, Guo W, Hanz R, Hartle Mougiou K, Hayes D, Irisson J-O, Köser K, Lopez-Garcia P, Ludgate J, Massot Campos M, McQuillan J, Montresor M, Moore CM, Morgan H, Masoudi M, Murphy C, Morris A, Nakath D, Oxborough K, Papadimitriou E, Patey M, Picheral M, Regan F, Robidart J, Siracusa F, Spenser D, Schaap A, Schuback N, Thornton B, Valiadi M, Walk J, Weng X, Wilson E (2023). Technologies for Ocean Sensing project developments in imaging and sensing. In: OCEANS 2023. Limerick, Ireland
  • Ayata S-D, Maps F, Irisson J-O (2023). Travaux récents sur le zooplancton Arctique. In: Colloque Université Laval - Sorbonne Université sur les Sciences Marines Arctiques. Paris, France
  • Picheral M, Catalano C, Accardo A, Baudena A, Claustre H, Courchet L, Drago L, Elineau A, Guidi L, Irisson J-O, Jalabert L, Kiko R, Leymarie E, Lombard F, Ricour F, Schmechtig C, Soviadan D, Stemmann L (2023). Resolving the scales of plankton ecology and biogeochemical fluxes with the Underwater Vision Profiler. In: ASLO Aquatic Sciences Meeting. Palma de Mallorca, Spain
  • Panaiotis T, Biard T, Carray–Counil L, Faillettaz R, Luo JY, Guigand CM, Cowen RK, Irisson J-O (2023). High throughput in situ imaging reveals complex ecological behaviour of giant mixotrophic protists. In: ASLO Aquatic Sciences Meeting. Palma de Mallorca, Spain
  • Beck M, Guidi L, Stemmann L, Ayata S-D, Irisson J-O (2023). Morphological diversity increases with decreasing resources along a zooplankton time series. In: ASLO Aquatic Sciences Meeting. Palma de Mallorca, Spain
  • Dugenne M, Corrales M, Stemmann L, Stock C, O’Brien T, Lombard F, Irisson J-O, Kiko R, Luo JY (2023). Zooplankton size distribution in the Atlantic Ocean: recent estimates from a global pelagic size structure database and relationships with environmental factors. In: ASLO Aquatic Sciences Meeting. Palma de Mallorca, Spain
  • Panaiotis T, Poteau A, Diamond-Riquier E, Courchet L, Motreuil S, Catalano C, Coppola L, Picheral M, Irisson J-O (2023). Temporal evolution of particles and plankton distributions across a mesoscale front during the spring bloom. In: ASLO Aquatic Sciences Meeting. Palma de Mallorca, Spain [PDF]
  • Baudena A, Ser-Giacomi E, Jalón-Rojas I, Fabri-Ruiz S, Galgani F, Kiko R, Lombard F, Irisson J-O, Moullec F, Pedrotti M-L (2023). The pathways of plastic in the Mediterranean Sea and its potential impact on marine biota. In: ASLO Aquatic Sciences Meeting. Palma de Mallorca, Spain
  • Maps F, Mercier A, Orenstein EC, Vilgrain L, Irisson J-O, Ayata S-D (2022). Fat chance : estimating the lipid content of Arctic zooplankton from in situ images. In: SFE2 GFÖ EEF 2022 Conference. SFE2 GFÖ EEF, Metz, France
  • Dubois C, Irisson J-O, Debreuve E (2022). Easily Interpretable, Non-parametric Sample Transformation for Classification. In: Colloque GRETSI (Groupe de Recherche et d’Etudes de Traitement du Signal et des Images). Nancy, France [PDF]
  • Vilgrain L, Maps F, Trudnowska E, Basedow SL, Niehoff B, Madoui M, Irisson J-O, Ayata S-D (2022). Astaxanthin as an indicator of copepod fitness - From indiviudal pigmentation to ecosystem functioning. In: Fourth ICES PICES Early Career Scientist Conference. St Johns, Newfoundland, Canada
  • Beck M, Ayata S-D, Picheral M, Lombard F, Kiko R, Stemmann L, Guidi L, Irisson J-O (2022). A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits. In: SFEcologie 2022. Metz, France [PDF]
  • Beck M, Cailleton C, Guidi L, Stemmann L, Ayata S-D, Irisson J-O (2022). Morphological diversity increases with oligotrophy along a zooplankton time series. In: Marine Imaging Workshop. Brest, France [PDF]
  • Irisson J-O, Salinas L, Colin S, COMPLEx team, Picheral M (2022). EcoTaxa: a tool to support the taxonomic classification of large datasets through supervised machine learning. In: SFEcologie 2022. Metz, France [PDF]
  • Irisson J-O, COMPLEx team (2022). Machine learning for plankton and particles images: from pictures to data. In: Imaginecology. Lyon, France [PDF]
  • Irisson J-O (2022). Observing plankton in the open ocean with quantitative imaging. In: Sustainability Research and Innovation Congress. Pretoria, South Africa [PDF]
  • Denvil-Sommer A, Le Quéré C, Buitenhuis ET, Guidi L, Irisson J-O (2021). Using new observations and Machine Learning to improve organic sinking processes in the PlankTOM global ocean biogeochemical model. In: EGU General Assembly. [PDF]
  • Creach V, Cabrera P, Artigas LF, Grégori G, Irisson J-O, Lefebvre A, Lindh M, Möller KO, Seppala J, Thyssen M, Lombard F, Schepers L (2021). Working towards integration of new data describing biological essential ocean variables from marine coastal ecosystems. In: Aquatic Sciences Meeting. Virtual
  • Orenstein EC, Maps F, Ayata S-D, Irisson J-O (2021). Exploring and exploiting new tools for functional trait extraction from in situ plankton images. In: Aquatic Sciences Meeting. [PDF]
  • Dubois C, Irisson J-O, Debreuve É (2021). Correction of the estimation of the volume of copepods from 2-dimensional in situ images. In: Aquatic Sciences Meeting. [PDF]
  • Vilgrain L, Maps F, Trudnowska E, Basedow SL, Madoui A, Niehoff B, Irisson J-O, Ayata S-D (2021). Could color be an indicator of copepod fitness? A focus on carotenoid pigmentation. In: Aquatic Sciences Meeting. [PDF]
  • Drago L, Panaiotis T, Irisson J-O, Babin M, Biard T, Carlotti F, Coppola L, Guidi L, Hauss H, Karp-Boss L, Lombard F, McDonnell AMP, Picheral M, Rogge A, Waite AM, Kiko R, Stemmann L (2021). Imaged-based analysis of the global distribution of zooplankton biomass through a habitat modelling approach. In: Aquatic Sciences Meeting. [PDF]
  • Panaiotis T, Boniface-Chang G, Dulac-Arnold G, Blanc B, Biard T, Caray-Counil L, Desnos C, Elineau A, Jalabert L, Kiko R, Lombard F, Picheral M, Romagnan J-B, Stemmann L, Irisson J-O (2021). Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa. In: Aquatic Sciences Meeting. [PDF]
  • Martin-Cabrera P, Lombard F, Irisson J-O, Stemmann L, Möller K, Lindh M, Creach V, Schepers L (2020). Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards. In: Biodiversity Information Science and Standards. Pensoft Publishers, p e58932 10.3897/biss.4.58932 [PDF]
  • Irisson J-O, Vilgrain L, Cailleton C, Picheral M, Maps F, Ayata S-D (2020). Le deep learning comme extracteur de caractéristiques morphologiques: Application à l’écologie du plancton marin. In: Imaginecology. [PDF]
  • Picheral M, Abidi E, Berry F, Coindat J, Brousseau D, Dias F, Fevre S, Guidi L, Irisson JO, Legendre L, Lombard F, Manzanera A, Mortier L, Navarro L, Picheral L, Stemmann L, Thibault S, Tixier T (2020). UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms. In: Ocean Sciences Meeting. San Diego, California, USA [PDF]
  • Irisson J-O, Cailleton C, Desnos C, Jalabert L, Elineau A, Stemmann L, Ayata S-D (2020). Morphological diversity increases with oligotrophy along a zooplankton time series. In: Ocean Sciences Meeting. San Diego, California, USA [PDF]
  • Trudnowska E, Lacour L, Rogge A, Irisson JO, Waite AM, Babin M, Stemmann L (2020). Unravelling the dynamics of pelagic ecosystems by quantitative observation of morphological attributes of marine snow: a case study in the Arctic. In: Ocean Sciences Meeting. San Diego, California, USA [PDF]
  • Panaiotis T, Babin M, Biard T, Carlotti F, Coppola L, Guidi L, Hauss H, Karp-Boss L, Kiko R, Lombard F, McDonnell AMP, Picheral M, Rogge A, Waite AM, Irisson JO, Stemmann L (2020). Typology of plankton communities seen by in situ imaging, from the epi to the mesopelagic layers of the global ocean. In: Ocean Sciences Meeting. San Diego, California, USA [PDF]
  • Vilgrain L, Irisson J-O, Ayata S-D, Picheral M, Babin M, Maps F (2020). Morphological traits of zooplankton reveal ecological patterns along ice melt dynamics in the Arctic. In: Ocean Sciences Meeting. San Diego, California, USA [PDF]
  • Fauvelot C, Riquet F, Daguin-Thiébaut C, Nuñes F, Japaud A, Bézault E, Irisson J-O, Bouchon C (2019). Porites astreoides throughout the Caribbean: the success of one or several species? In: International Marine Connectivity (iMarCo) Conference.
  • Faillettaz R, Paris CB, Blandin A, Koubbi P, Irisson J-O (2019). Sun-compass orientation in Mediterranean fish larvae. [PDF]
  • Guidi-Guilvard L, Dallot S, Irisson J-O (2019). Small-scale horizontal distribution patterns of nematodes in deep NW Mediterranean surface sediments (DYFAMED-BENTHOS 2003). [PDF]
  • Benedetti F, Ayata S-D, Guilhaumon F, Irisson J-O, Adloff F (2019). Using species functional traits to explore the potential impacts of climate change(s) on plankton functional diversity. In: IMBeR. Brest, France
  • Lombard F, Irisson J-O, Picheral M, al et (2019). Quantitative imaging for global observations of planktonic ecosystems.
  • Lombard F, Boss E (2019). Globally consistent quantitative observations of planktonic ecosystems.
  • Faillettaz R, Paris CB, Durand E, Irisson J-O (2019). Modelling fish dispersal and settlement in the Mediterranean Sea. In: MODELIFE. [PDF]
  • Faillettaz R, Voué R, Crec’hriou R, Garsi L-H, Lecaillon G, Agostini S, Lenfant P, Irisson J-O (2019). Spatio-temporal patterns of larval fish settlement in the Northwestern Mediterranean Sea. [PDF]
  • Faillettaz R, Paris CB, Durand E, Blandin A, Koubbi P, Irisson J-O (2019). Larval fish behavior nuances Hjort’s aberrant drift hypothesis. In: Larval Fish Conference. Plama de Mallorca, Spain [PDF]
  • Stemmann L, Romagnan J-B, Lefebvre A, Grégori G, Irisson J-O, Karlson B, Seppala J, Kraft K, Lionel G, Artigas LF, Soviadan D, Wacquet G, Möller KO, Deneudt K, Claus S, Lombard F (2019). Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe. In: IMBER. [PDF]
  • Faillettaz R, Picheral M, Luo JY, Guigand CM, Cowen RK, Irisson J-O (2018). Imperfect automatic image classification successfully describes plankton distribution patterns. In: Workshop on Machine Learning in Marine Sciences. Copenhagen, Denmark [PDF]
  • Irisson J-O, Schröder S-M, Picheral M (2018). EcoTaxa: A human-computer interface to classify images along a taxonomy with the help of machine-learning. In: Workshop on Machine Learning in Marine Sciences. Copenhagen, Denmark [PDF]
  • Irisson J-O (2018). Monitoring plankton in the open ocean with quantitative imaging. In: Intergovernmental Conference on Marine Biodiversity of Areas Beyond National Jurisdiction. United Nations, New-York, USA [PDF]
  • Irisson J-O, Schröder S-M, Picheral M (2018). Quantitative image processing with machine learning: How to turn images into data. In: Aquatic research models to study regeneration and aging. Nice, France [PDF]
  • Paris CB, Faillettaz R, Irisson J-O (2018). Environmental effects on larval fish ontogenetic vertical migration. In: Larval Fish Conference. Victoria, British Columbia, Canada [PDF]
  • Faillettaz R, Paris CB, Irisson J-O (2018). Larval fish swimming behavior alters dispersal patterns from marine protected areas in the North-Western Mediterranean Sea. In: Larval Fish Conference. Victoria, British Columbia, Canada [PDF]
  • Cailleton C, Desnos C, Jalabert L, Elineau A, Stemmann L, Ayata S-D, Irisson J-O (2018). Morphological diversity increases with oligotrophy along a zooplankton time series. In: SFEcologie 2018. Rennes [PDF]
  • Paris CB, Irisson J-O (2017). Lagrangian Observations and Modeling of Marine Larvae. In: EGU General Assembly. Vienna, Austria
  • Irisson J-O (2017). Machine learning for the classification of plankton images. In: MEGALODOM. Villefranche-sur-mer, France [PDF]
  • Irisson J-O (2017). Visualisation dynamique des données d’observation. [PDF]
  • Faillettaz R, Irisson J-O (2017). Suivi de l’arrivée des larves de poissons en phase d’installation en Méditerranée NW. In: RESOMAR. [PDF]
  • Benedetti F, Jalabert L, Sourisseau M, Beker B, Elineau A, Cailliau C, Irisson J-O, Picheral M, Stemmann L, Pouline P (2017). Spatio-temporal variations of the planktonic communities in a North Atlantic Marine Protected Area and their potential links with Sardina pilchardus (Walbaum, 1792) catches. In: COAST. Bordeaux [PDF]
  • Benedetti F, Guilhaumon F, Adloff F, Irisson J-O, Ayata S-D (2016). Projected shifts in copepod surface communities in the Mediterranean Sea under several climate change scenarios. In: Ocean Sciences Meeting. New Orleans, Louisiana
  • Irisson J-O (2016). Traitement, sauvegarde et diffusion des données. In: RESOMAR. [PDF]
  • Faillettaz R, Durand E, Paris CB, Koubbi P, Irisson J-O (2016). Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort’s aberrant drift hypothesis. In: SFEcologie 2016. Marseille [PDF]
  • Faillettaz R, Irisson J-O, Koubbi P, Paris CB, Durand E, Blandin A (2015). Les larves de poissons Méditerranéens, championnes de la course d’orientation. In: DRIVER-SUBLIMO. Les Embiez, France [PDF]
  • Figuières C, Irisson J-O, Reygondeau G, Pi Alperin MN, Sy M, Salles J-M (2015). Multidimensional Ecosystem Services Index (MESI). In: MISTRALS Workshop. [PDF]
  • Reygondeau G, Irisson J-O, Guieu C, Albouy C, Hattab T, Benedetti F, Ayata S-D, Gasparini S, Koubbi P (2015). Regionalisation of the Mediterranean Sea. In: MERMEX 2015 Workshop.
  • Irisson J-O, Sy M, Figuières C (2015). Multidimensional Ecosystem Services Index (MESI). In: FAERE Workshop. [PDF]
  • Faillettaz R, Blandin A, Durand E, Paris CB, Irisson J-O (2015). Behaviour versus oceanic currents during the dispersal of larval fish in the Northwestern Mediterranean sea. In: Aquatic Sciences Meeting. Granada [PDF]
  • Benedetti F, Guilhaumon F, Adloff F, Somot S, Irisson J-O, Ayata S-D (2015). Uncertainties in ensemble forecasting of copepod species richness through nice modelling, under multiple climate change scenarios. In: MERMEX 2015 Workshop. Marseille [PDF]
  • Irisson J-O, Faillettaz R, Luo JY, Guigand CM, Cowen RK (2015). Fine-scale distribution of zooplankton over a mesoscale front explored through high frequency imaging. In: Aquatic Sciences Meeting. Granada [PDF]
  • Reygondeau G, Albouy C, Hattab T, Benedetti F, Irisson J-O, Ayata S, Gasparini S, McKenzie C, Guieu C, Koubbi P (2014). Present status of Mediterranean marine biodiversity and potential anthropogenic threat. In: IARU Sustainability Science Congress. Copenhagen, Denmark [PDF]
  • Reygondeau G, Albouy C, Hattab T, Benedetti F, Irisson J-O, Ayata S-D, Gasparini S, McKenzie C, Koubbi P (2014). Mediterranean biodiversity (from phytoplankton to top predators) and present threats. In: ICES. A Coruña, Spain [[PDF](biblio/Reygondeau et al. - 2014 - Mediterranean biodiversity (from phytoplankton to .pdf)]
  • Reygondeau G, Irisson J-O, Albouy C, Ayata S-D, Benedetti F, Guieu C, Gasparini S, Koubbi P (2014). Ecological geography of the Mediterranean Sea. In: IMBER. Bergen, Norway [PDF]
  • Luo JY, Grassian B, Tang D, Irisson J-O, Greer AT, Guigand CM, McClatchie S, Cowen RK (2014). Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front. In: ICES. A Coruña, Spain [PDF]
  • Faillettaz R, Luo JY, Guigand CM, Cowen RK, Irisson J-O (2014). Fine-scale distribution of larval fish and zooplankton over a mesoscale front explored through high frequency imaging. In: Ocean Sciences Meeting. Honolulu, HI, USA [PDF]
  • Ayata S-D, Reygondeau G, Benedetti F, Irisson J-O, Guieu C (2014). Impact of climate change on planktonic ecoregions of the mediterranean sea. In: ACCOBAMS Workshop on Climate Change. Monaco, France
  • Luo JY, Grassian B, Tang D, Irisson J-O, Greer AT, Guigand CM, McClatchie S, Cowen RK (2014). Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front. [PDF]
  • Sukhovich A, Irisson J-O, Bonnieux S, Simons FJ, Ogé A, Hello Y, Nolet G (2013). MERMAIDs: First observations of teleseismic P-waves with freely floating submarine robots. In: IAHS-IAPSO-IASPEI Joint Assembly. Gothenburg, Sweden [PDF]
  • Reygondeau G, Irisson J-O, Guieu C, Gasparini S, Ayata S-D, Koubbi P (2013). Toward a dynamic biogeochemical division of the Mediterranean Sea in a context of global climate change. In: EGU General Assembly. Vienna, Austria
  • Irisson J-O (2013). Autoplot: ready made plots with ggplot2. In: Rencontres R. Lyon, France [PDF]
  • Reygondeau G, Irisson J-O, Albouy C, Ayata S-D, Benedetti F, Guieu C, Gasparini S, Koubbi P (2013). Ecoregionalisation of the Mediterranean Sea. [PDF]
  • Faillettaz R, Irisson J-O (2013). Drivers of temporal variability of larval fish abundance in villefranche bay (Northwestern Mediterranean Sea) over a 7-year time series (2006-2012). [PDF]
  • Benedetti F, Reygondeau G, Irisson J-O, Gasparini S, Koubbi P, Guieu C, Ayata S-D (2013). Distribution and biogeography of the copepods in the mediterranean sea. [PDF]
  • Irisson J-O, Webb A, Passafiume O, Mousseau L (2012). Detecting hydrologic seasons in a long term monitoring time series. In: Time-series analysis in marine science and applications for industry. Brest, France [PDF]
  • Howes E, Assailly C, Irisson J-O, Stemmann L (2012). Calcifying pteropod time series provides a baseline against which to measure local environmental change. In: Time-series analysis in marine science and applications for industry. Brest
  • Giraldo C, Mayzaud P, Tavernier E, Irisson J-O, Becciu J, Boutoute M, Chartier A, Koubbi P (2012). Lipid condition of Pleuragramma antarcticum larvae. In: 5th Rencontres de l’Ichtyologie de France. Paris, France
  • Giraldo C, Mayzaud P, Tavernier E, Irisson J-O, Penot F, Becciu J, Chartier A, Boutoute M, Koubbi P (2012). Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in the East Antarctica. In: 36th Larval Fish Conference. Bergen, Norvège
  • Sukhovich A, Irisson J-O, Ogé A, Simons FJ, Deschamps A, Hello Y, Nolet G (2011). A probabilistic approach to the discrimination of underwater acoustic signals generated by teleseismic P-waves. In: EGU General Assembly. Vienna, Austria [PDF]
  • Irisson J-O, Paris CB, Cowen RK, Planes S (2009). Ontogenetic vertical ‘migration’ in coral-reef fish larvae communities and its consequences for dispersal. In: ASLO Aquatic Sciences Meeting. Nice, France [PDF]
  • Paris CB, Guigand CM, Irisson J-O, Fisher R, D’Alessandro E (2008). Orientation With No Frame of Reference (OWNFOR): A novel system to observe and quantify orientation in reef fish larvae. In: Caribbean Connectivity: Implications for Marine Protected Area Management. Proceedings of a Special Symposium, 9-11 November 2006, 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize City, Belize. Marine Sanctuaries Conservation Series ONMS-08-07, Grober-Dunsmore R, Keller BD (eds) U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Sanctuary Program, Silver Spring, MD, p 52–62 [PDF]
  • Irisson J-O, Chérubin LM, Planes S (2008). Consequences of increased mobility and quicker development in warmer waters on the dispersal trajectories of fish larvae. In: Ocean Sciences Meeting. Orlando, FL, USA [PDF]
  • Irisson J-O, Paris CB, De Lara M, Planes S (2008). The importance of behavior for self-recruitment: a modelling approach. In: International Coral Reef Symposium. Fort Lauderdale, FL, USA [PDF]
  • Paris CB, Srinivasan A, Chérubin LM, Cowen RK, Irisson J-O, Planes S (2006). Influence of biophysical processes on coral reef fish population connectivity inferred by modeling. [PDF]
  • Irisson J-O, Paris CB, Guigand CM, Fisher R (2006). Orientation With No Frame of Reference (OWNFOR): An in situ system to detect and measure orientation in pelagic reef fish larvae. [PDF]
  • Irisson J-O, De Lara M, Planes S (2005). Lagrangian or not lagrangian? In: LAPCOD meeting. Lerici, Italy [PDF]