2010
Lombard, F., Eloire, D., Gobet, A., Legendre, L. Stemmann, L., Dolan, J.R., Sciandra, A., Gorsky, G. 2010. Experimental and modeling evidence of appendicularian-ciliate interactions. Limnology and Oceanography, 55:77-90. PDF
2009
Andersen, V., Goutx, M,. Prieur, L., Dolan, J.R. 2009. Short-scale temporal variability of physical, biological and biogeochemical processes in the NW Mediterranean Sea: an introduction. Biogeosciences, 6:453-461. PDF
Dolan, J.R., Ritchie, M.E., Tunin-Ley, A., Pizay, M.-D. 2009. Dynamics of core and ocasional species in the marine plankton: tintinnid ciliates of the N.W. Mediterranean Sea. Journal of Biogeography, 36:887-895. PDF
Dolan, J.R., Mostajir, B., Sime-Ngando, T. 2009. Rassoulzadegan in Villefranche-sur-Mer and the 'evolution' of marine microbial ecology over the last 3 decades. Aquatic Microbial Ecology, 57:221-225. PDF
Pizay, M.-D., Lemeé, R., Simon, N., Cras, A.-L., Laugier, J.-P., Dolan, J.R. 2009. Night and day morphologies in a planktonic dinoflagellate. Protist, 160:565-575. PDF(--->Fingers or Toes? - "Editors Choice" in Science PDF)
Raybaud, V., Tunin-Ley, A., Ritchie, M. E., Dolan, J.R. 2009. Similar patterns of community organization characterize distinct groups of different trophic levels in the plankton of the NW Mediterranean Sea. Biogeosciences, 6:431-438. PDF
2008
Dolan, J.R., Coats, D.W. 2008. Physiological diversity in widely distributed microzooplankton: Digestion in the ciliate Euplotes vannus. in 'Microbial Ecology Research Trends' T. Van Tijk (ed), Nova Biomedical, New York, pp 207-220. PDF
2007
Agis, M. Granda, A., Dolan, J. R. 2007. A cautionary note: examples of possible microbial community dynamics in dilution grazing experiments. Journal of Experimental Marine Biology and Ecology, 341:176-183. PDF
Dolan, J.R. 2007. Le paradoxe du plancton. in 'Voir l'Invisible' Fox-Keller, E., Gex, J.-P. (eds), Omniscience, pp 126-127. PDF
Dolan, J.R. 2007. On Kofoid's trail: marine biological laboratories in Europe and their life histories. Limnology and Oceanography Bulletin, 16:73-76. PDF
Dolan, J.R., Ritchie, M.R., Ras, J. 2007. The neutral community structure of planktonic herbivores, tintinnid ciliates of the microzooplankton, across the SE Pacific Ocean. Biogeosciences 4:297-310. PDF
Gavrilova, N., Dolan, J.R. 2007. A note on species lists and ecosystem shifts: Black Sea tintinnids, ciliates of the microzooplankton. Acta Protozoologica, 46:279-288. PDF
Simek, K., Weinbauer, MG, Hornak, K., Jezbera, J., Nedoma, J., Dolan, J. R. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology, 9:789-800. PDF
Thingstad, T.F., Havskum, H., Zweifel,U.-L., Berdalet, E., Sala, M. M. , Peters, F., Alcaraz, M., Scharek, R., Perez, M., Jacquet, S., Fonnes Flaten, G.A., Dolan, J.R., Marrasé, C., Rassoulzadegan, F., Hagström, A., Vaulot, D. 2007. Ability of a "minimum" microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose and Si. Journal of Marine Systems, 64:15-34. PDF
Weinbauer, MG, Hornak, K., Jezbera, J., Nedoma, J., Dolan, J.R., Simek, K., 2007. Synergistic & antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology, 9:777-788. PDF
2006
Dolan, J. R. 2006. Re-discovered beauty - new images for old descriptions - tropical tintinnids of the genus Xystonellopsis (Ciliophora, Tintinnia). Protist, 157: 251-253. PDF
Dolan, J.R. 2006. Microbial Biogeography? Journal of Biogeography, 33:199-200. PDF
Dolan, J. R. Jacquet, S., Torreton, J.-P. 2006. Comparing taxonomic and morphological biodiversity of tintinnids (planktonic ciliates) of New Caledonia. Limnology and Oceanography, 51:950-958. PDF
Dolan, J.R. , Lemée, R., Gasparini, S., Mousseau, L., Heyndrickx, C. 2006. Probing diversity in the plankton: using patterns in tintinnids (planktonic marine ciliates) to identify mechanisms. Hydrobiologia, 555: 143-157. PDF
Dolan, J. R. 2006. Microbial Ecology : an Evolutionary Approach by J. V. McArthur. Journal of Plankton Research, 28: 803. PDF
Simek, K., Hornak, K., Jezbera, J., Nedoma, J., Vrba, J., Straskrabova, V., Macek, M., Dolan, J.R., Hahn, M., 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology, 8:1613-1624. PDF
2005
Dolan J.R. 2005. An introduction to the biogeography of aquatic microbes. Aquatic Microbial Ecology 41: 39-48. PDF
Dolan J.R., McKeon K. 2005. The reliabilty of grazing rate estimates from dilution experiments: Have we over-estimated rates of organic carbon consumption by microzooplankton? Ocean Science 1:1-7. PDF
Dolan, J.R., Rassoulzadegan, F., Caron, D.A. 2005. The first decade of Aquatic Microbial Ecology (1995 -2005): Evidence for gradualism or punctuated equilibrium? Aquatic Microbial Ecology 30 :3-6. PDF
Dolan, J.R. 2005. Marine ecology- different measures of biodiversity. Nature 433:E9. PDF
2004
Bettarel, Y., Sime-Ngando, T., Amblard, C., Dolan, J. R. 2004. Viral activity in two contrasting lak ecosystems. Applied and Environmental Microbiology, 70: 2941-2951. PDF
Riisgard, H. U., Barth, H., Larsen, P.S., Roepstorff, P., Boero, F., Dolan, J.,
Sommer, U., Zupo, V.,Vermaat, J., Anderson, T.R., Kneib, R.T., Lomstein, B. A., Jenkinson, I.,
Shumway, S.E. 2004. Peer review: journal articles versus research proposals. Marine Ecology Progress Series 277:301-309. PDF
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2003
Dolan J. R., Sall N., Metcalfe
A. & Gasser B., 2003. Effects of turbulence on feeding and growth in
a marine oligotrich ciliate. Aquatic Microbial Ecology 31: 183-192. PDF
Dolan, J. R. 2003. Ciliate microzooplankton, an example of congruence of local and regional diversity, in: Heip, C.H.R. et al. "Biodiversity of coastal marine ecosystems patterns and processes: a Euroconference" Corinth, 05-10 May 2001. pp 21-23. PDF
Havskum H., Thingstad T.
F., Scharek R., Peters F., Berdalet E., Sala M. M., Alcaraz M., Bangsholt
J. C., Zweifel U. L., Hagström Å., Perez M. & Dolan J., 2003.
Silicate and labile DOC interfere in structuring the microbial food web via
algal-bacterial competition for mineral nutrients: results of a mesocosm
experiment. Limnology and Oceanography 48: 129-140. PDF
Simek K., Hornak K., , Masin
K., Christaki U., Nedoma J., Weinbauer M. G. & Dolan J. R., 2003. Effect
of resource enrichment on grazed and ungrazed bacterioplankton communities
of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135. PDF
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2002
Betteral Y., Dolan J. R.,
Hornak M., Lemée R., Masin K., Pedrotti M. L., Rochelle-Newall E., Simek K. & Sime-Ngando
T., 2002. Hot, cold and missing links in a planktonic microbial community. FEMS Microbiology Ecology 42: 451-462. PDF
Dolan J. R., Claustre H.,
Carlotti F., Plounevez S. & Moutin T., 2002. Microzooplankton diversity:
relationships of tintinnid ciliates with resources, competitors and predators
from the Atlantic Coast of Morocco to the Eastern Mediterranean. Deep-Sea Research (Part I, Oceanographic Research Papers) 49: 1217-1232. PDF
Peters F., Marassé C., Havskum H., Rassoulzadegan F., Dolan J. R., Alcarez M. & Gasol
J. M., 2002. Turbulence and the microbial food web: effects on bacterial
losses to predation and on community structure. Journal of Plankton Research 24: 321-331. PDF
Simek K., Nedoma J., Pernthaler
J., Posch T. & Dolan J. R., 2002. Altering the balance between bacterial
production and protistan bacterivory triggers shifts in freshwater bacterial
community composition. Autonie van Leeuwenhoek 81: 435-463. PDF
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2001
Dolan J. R. & Gallegos
C. L., 2001. Estuarine diversity of tintinnids (planktonic ciliates). Journal of Plankton Research 23: 1009-1027. PDF
Simek K., Pernthaler J.,
Weinbauer M. G., Hornak K., Dolan J. R., Nedoma J., Masin M. & Amann
R., 2001. Changes in bacterial community composition, dynamics and viral
mortality rates associated with enhanced flagellate grazing in a meso-eutrophic
reservoir. Applied and Environmental Microbiology 67: 2723-2733. PDF
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2000
Dolan J. R. & Pérez M. T.,
2000. Costs and benefits of mixotrophy: the case of marine oligotrichs. Freshwater Biology 45: 227-238. PDF
Dolan J. R., 2000. Tinitinnid ciliate diversity in the Mediterranean Sea: Longitudinal patterns related to water column structure in late spring-early summer. Aquatic Microbial Ecology 22: 69-78. PDF
Dolan J. R., Gallegos C. L. & Moigis
A., 2000. Dilution effects on microzooplankton in dilution grazing experiments. Marine Ecology Progress Series 200: 127-139. PDF
Pérez M. T., Dolan J. R., Vidussi F. & Fukai
E., 2000. Diel vertical distribution of planktonic ciliates within the surface
layer of the NW Mediterranean (May 1995). Deep-Sea Research (Part I, Oceanographic Research Papers) 47: 479-503. PDF
1999
Arin L., Berdalet E., Marrasé C., Estrada M., Guixa-Boixereu & Dolan
J. R., 1999. Particulate DNA and protein relative to microorganism biomass
and detritus in the Catalano-Balearic Sea (NW Mediterranean) during stratification. Journal of Plankton Research 21: 1299-1316. PDF
Cariou J.-B., Dolan J. R. & Dallot
S., 1999. A preliminary study of tintinnid diversity in the N. W. Mediterranean. Journal of Plankton Research 21: 1065-1075. PDF
Christaki U., Jacquet S., Dolan J. R.,
Vaulot D. & Rassoulzadegan F., 1999. Growth and grazing on Prochlorococcus and Synechococcus by two marine ciliates. Limnology and Oceanography 44: 52-61. PDF
Christaki U., Van Wambeke F. & Dolan
J. R., 1999. Nanoflagellates (mixotrophs, heterotrophs and autotrophs) in
the oligotrophic eastern Mediterranean: standing stocks, bacterivory and
relationships with bacterial production. Marine Ecology Progress Series 181: 297-307. PDF
Dolan J. R., Claustre H. & Vidussi
F., 1999. Planktonic ciliates in the Mediterranean Sea: longitudinal trends. Deep-Sea Research (Part I, Oceanographic Research Papers) 46: 2025-2039. PDF
Dolan J. R. & Simek K., 1999. Diel
periodicity in Synechococcus and grazing by
heterotrophic nanoflagellates: analysis of food vacuole contents. Limnology and Oceanography 44: 1565-1570. PDF
Pelegrí S. P., Christaki U., Dolan J. & Rassoulzadegan
F., 1999. Particulate and dissolved organic carbon production by the heterotrophic
nanoflagellate Pteridomonas danica Patterson and Fenchel. Microbial Ecology 37: 276-284. PDF
Pelegrí S. P., Dolan J. & Rassoulzadegan
F., 1999. Use of high temperature calatlytic oxidation (HTCO) to measure
carbon content of microorganisms. Aquatic Microbial Ecology 16: 273-280. PDF
Simek K., Kojecká P., Nedoma J., Hartman P., Vrba J. & Dolan
J. R., 1999. Shifts in bacterial community composition associated with different
microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634-1644. PDF
Thingstad T. F., Pérez M., Pelegrí S., Dolan J. & Rassoulzadegan
F., 1999. Trophic control of bacterial growth in microcosms containing a
natural community from northwest Mediterranean surface waters. Aquatic Microbial Ecology 18: 145-156. PDF
1998
Christaki U., Dolan J.R., Pelegrí S. P. & Rassoulzadegan
F., 1998. Consumption of picoplankton-size particles by marine ciliates:
effects of physiological state of the ciliate and particle quality. Limnology and Oceanography 43: 458-464. PDF
Christaki, U., Van Wambeke, F., Dolan, J.R., Bianchi, M., Rassoulzadegan, F. 1998. Importance of phagotrophic pigmented flagellates (mixotrophs) in the oligotrophic eastern Mediterranean, a first approach. Rapp. Comm. Int. Mer Médit., 35:344-345. PDF
Dolan J. R. & Simek K., 1998. Ingestion
and digestion of an autotrophic picoplankter, Synechococcus, by a heterotrophic
nanoflagellate, Bodo saltans. Limnology and Oceanography 43: 1740-1746. PDF
Pelegri, S., Christaki, U., Dolan, J., Rassoulzadegan, F. 1998. The use of Escherichia coli as food source for protozoa in excretion experiments: preliminary results. Rapp. Com. Inter. Mer Médit., 35:358-359. PDF
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1997
Dolan, J. R . 1997. Phosphorus and ammonia excretion by planktonic protists: Trends associated with cell size and growth rate. Marine Geology 139:109-122. PDF
Dolan, J. R ., Simek, K. 1997. Processing of ingested matter in Strombidium sulcatum, a marine ciliate. Limnology and Oceanography,42:393-397. PDF
Klein, C., Dolan, J. R., Rassoulzadegan, F. 1997. Experimental examination of the effects of rainwater on microbial communities in the surface layer of the N. W. Mediterrean Sea. Marine Ecology Progress Series, 158:41-50. PDF
Pérez, M. T., Dolan, J. R. Fukai, E. 1997. Planktonic oligotrich ciliates in the N. W. Mediterrean: growth rates and consumption by copepods. Marine Ecology Progress Series 155:89-101. PDF
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1996
Christaki, U., Belviso, S., Dolan, J. R., Corn, M. 1996. Assessment of the role of planktonic copepods and ciliates in the release to solution of DMSP in the N. W. Mediterranean Sea. Marine Ecology Progress Series 141:119-127. PDF
Pérez, M. T., Dolan, J. R., Rassoulzadegan, F., Mostajir, B. 1996. Predation on marine picoplankton populations examined with an "add-in" approach. Journal of Plankton Research 18 : 635-641. PDF
Thingstad, T. F., Dolan, J. R., Fuhrman, J. A. 1996. Loss rate of an oligotrophic bacterial assemblage as measured by 3H-thymidine and 32PO 4: good agreement and near- balance with production. Aquatic Microbial Ecology 10:29-36. PDF
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1995
Dolan, J. R ., Marrase, C. 1995. Planktonic ciliate distribution relative to a deep chlorophyll maximum: Catalan Sea, N. W. Mediterranean, June 1993. Deep-Sea Research I, 42: 1965-1987. PDF
Dolan, J. R. , Thingstad, T. F., Rassoulzadegan, F. 1995. Phosphate transfer between microbial size-fractions in Villefranche Bay (Mediterranean Sea), France in autumn.Ophelia 41:71-85. PDF
Mostajir, B.; Dolan, J. R., Rassoulzadegan, F. 1995. A simple method for the quantification of a class of labile marine pico- and nano-sized detritus: DAPI Yellow Particles (DYP). Aquatic Microbial Ecology 9:243-258. PDF
Mostajir, B.; Dolan, J. R., Rassoulzadegan, F. 1995. Seasonal variations of pico- and nano- detrital particles (DAPI Yellow Particles, DYP) in the Ligurian Sea (NW Mediterranean). Aquatic Microbial Ecology 9:259-266. PDF
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1994
Allali, K., Dolan, J. R., Rassoulzadegan, F. 1994. Culture characteristics and orthophosphate excretion of a marine oligotrich ciliate, Strombidium sulcatum, fed heat-killed bacteria. Marine Ecology Progress Series 105:159-165. PDF
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1993
Dolan, J.R. 1993. Review of Marine Interstitial Ciliates by P.C. Carey. Estuaries 16:231-232. PDF
1992
Dolan J. R. 1992. Mixotrophy in ciliates: a review of Chlorella symbiosis and chloroplast retention. Marine Microbial Food Webs 6:133-153. PDF
Dolan, J. R. , Gallegos, C. L. 1992. Trophic role of planktonic rotifers in the Rhode River estuary, spring and summer, 1991. Marine Ecology Progress Series 85:187-199. PDF
1991
Dolan, J. R., 1991. Review of Ecology of Marine Protozoa by G. Capriuolo (ed). Limnology and Oceanography 36:217-218. PDF
Dolan, J. R., Coats, D.W. 1991. Preliminary prey digestion in a predacious estuarine ciliate, Euplotes woodruffi, and the use of digestion data to estimate ingestion. Limnology and Oceanography 36:558-565. PDF
Dolan, J.R. Gallegos, C.L. Trophic coupling of rotifers, microflagellates and bacteria during fall months iin the Rhode River estuary. Marine Ecology Progress Series 77:147-156. PDF
Dolan, J.R., Coats, D.W. 1991. A study of predacious ciliate feeding using prey ciliates labeled with fluorescent microspheres. Journal of Plankton Research 13:609-627. PDF
Dolan, J.R. 1991. Microphagous ciliates in mesohaline Chesapeake Bay waters: estimates of growth rates and consumption by copepods. Marine Biology 111:303-309. PDF
Dolan, J. R., Coats, D.W. 1991. Changes in fine-scale vertical distributions of ciliate microzooplankton related to anoxia in Chesapeake Bay waters. Marine Microbial Food Webs 5:81-93. PDF
Dolan, J.R. 1991. Guilds of ciliate microzooplankton in the Chesapeake Bay. Estuarine, Coastal and Shelf Science 33:137-152. PDF
1990 and before
Dolan, J.R., Coats, D.W. 1990. Seasonal abundance of planktonic ciliates and microflagellates in mesohaline Chesapeake Bay waters. Estuarine, Coastal and Shelf Science 31:157-175. PDF
Dolan, J.R., Antipa, G.A. 1985. Comparative stomatogenesis of endocommensal scuticociliates, Peniculistoma mytlii and Mytilophilus pacificae from mytilid mussels. Protistologica 21:323-332. PDF
Antipa, G.A., Dolan, J.R. 1985. Mytilophilus pacificae, n.g., n. sp.: a new mytilid endocommensal ciliate (Scuticociliatida). Transactions of the American Microscopical Society 104:360-368. PDF
Dolan, J., Antipa, G.A. 1982. Pairs of similar ciliates: a method of evaluating ciliate evolution. Journal of Protozoology 29:495 (abstract) PDF
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