UVECO
RESEARCHERS   &   LABS   &   PUBLICATIONS

( 11-Sep-2003 / fJ/rS/mpT)

 

 

RESEARCHERS  &  LABS  INVOLVED

 

 

LOBB

(Laboratoire d'Océanographie Biologique de Banyuls)

LMM-COM

(Laboratoire de Microbiologie Marine), UMR 6117, Centre d'Océanologie de Marseille(COM)

LOB

(Laboratoire d'Océanographie Biologique), UMR 6535, Centre d'Océanologie de Marseille (COM)

LBCM

(Laboratoire de Biochimie et de Chimie Marine), UPMC , Paris

CEFREM

(Centre de Formation et de Recherches sur l'Environnement Marin), UMR 5110, Perpignan

LSCE

(Laboratoire des Sciences du Climat et de l'Environnement), UMR CEA/CNRS 1572, Gif/Yvette

SBR

(Station Biologique de Roscoff), UMR 7127, Roscoff

LOV

(Laboratoire Océanologique de Villefranche), UMR 7093

 

 

 

Noms

 

Laboratoire

Expertise

 

 

 

 

JOUX Fabien

MC

LOBB

Activités bactériennes, immunodétection, cytométrie en flux

CONAN Pascal

MC

LOBB

Production primaire, paramètres photosynthétiques, excrétion

PUJO-PAY Mireille

CR1 CNRS

LOBB

COD, NOD, POD, sels nutritifs

LANTOINE François

MC

LOBB

Pigments photosynthétiques et photoprotecteurs

LEBARON Philippe

PR

LOBB

Diversité bactérienne globale et fonctionnelle

GHIGLIONE Jean-François

CR2 CNRS

LOBB

Diversité bactérienne globale et fonctionnelle

CATALA Philippe

AI CNRS

LOBB

Cytométrie en flux

ZUDAIRE Laurent

IE CNRS

LOBB

Instrumentation à la mer, mesures de lumière

 

 

 

 

SEMPÉRÉ Richard

CR1 CNRS

LMM-COM

Acides aminés, sucres, acides dicarboxyliques (HPLC)

TEDETTI Marc

Thèse

LMM-COM

Acides aminés, sucres, acides dicarboxyliques (HPLC),

protéine RecA, rendement de croissance bactérien

VANWAMBEKE France

CR1 CNRS

LMM-COM

Activités exoenzymatiques

LEFEVRE Dominique

CR1 CNRS

LOB-COM

Mesures d'activité respiratoire

RONTANI Jean-François

CR1 CNRS

LOB-COM

Photo-oxydation de composés phytoplanctoniques

MOMZIKOFF André

CR1

LBCM

Structure physico-chimique  de la CDOM

 

 

 

 

GOYET Catherine

PR

CEFREM

Photo-oxydation du COD, respiration bactérienne

TOURATIER Franck

Post-doc

CEFREM

Modélisation

 

 

 

 

BELVISO Sauveur

CR1 CNRS

LSCE

Dosages DMSP, DMS

 

 

 

 

PARTENSKY Frédéric

DR2 CNRS

SBR

Cyanobactéries marines

MARIE Dominique

IE CNRS

SBR

Cytométrie en flux

GARCZAREK Laurence

Post-doc

SBR

Biologie moléculaire

SIX Christophe

Thèse

SBR

Physiologie

DUFRESNE Anne

Thèse

SBR

Génomique

 

 

 

 

CHAMI Malik

MC

LOV

 Optique marine

 

 

Collaborations extérieures :

 

Noms

 

Laboratoire

Laboratoire

Expertise

 

 

 

 

 

JEFFREY Wade

PR

CEDB, USA

CEDB (Center for Environmental Diagnostics and Bioremediation), University of West Florida, Pensacola, USA

Expertise sur l'étude in-situ du stress UV (objectif 3)

CAVICHIOLLI Rick

DR

UNSW, Australie

UNSW (University of New South Wales), Sydney, Australie

Protéomique bactéries (objectif 1)

MOPPER K.

PR

USA

University Old Dominion, USA

Photochimie (acides aminés, sucres dissous) (objectif 2)

KAWAMURA K.

PR

Japon

Low Temperature Institute, University of Sapporo, Japan

Photochimie (acides dicarboxyliques) (objectif 2)

 

 

 

 

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Tedetti, M. 2002. Influence du rayonnement UV sur la biodégradation de la matière organique dissoute en milieu marin. DEA Sciences de l’Environnement marin, Université de la Méditerranée, 46 pp.

 

Touratier, F., Legendre, L., & Vézina, A. 1999. Model of bacterial growth influenced by substrate C:N ratio and concentration. Aquatic Microbial Ecology, 19, 105-118

 

Touratier, F., Legendre, L., & Vézina, A. 2000. Northeast Water Polynya 1993: construction and modelling of a time series representative of the summer anticyclonic gyre pelagic ecosystem. Journal of Marine Systems, 27, 53-93

 

Touratier, F., Field, J.G., & Moloney, C.L. 2001. A stoichiometric model relating growth substrate quality (C:N:P ratios) to N:P ratios in the products of heterotrophic release

 

van Rijssel, M., Buma A.G.J. 2002. UV radiation induced stress does not affect DMSP synthesis in the marine prymnesiophyte Emiliana huxleyi. Aquat. Microb. Ecol. 28:167-174.

 

Vasilkov, A., Krotkov, N., Herman, J., McClain, C., Arrigo, K., and Robinson, W. 2001. Global mapping of underwater UV irradiances and DNA-weighted exposures using Total Ozone Mapping Spectrometer and Sea-viewing Wide Field-of-view Sensor data products. J.  Geoph. Res. 106:205-219.

 

Vaulot, D., Marie, D., Olson, R.J., and Chilsom, S.W. 1995. Growth of Prochlorococcus, a photosynthetic prokaryotic, in the equatorial Pacific Ocean. Science 268:1480-1482.

 

Vinebrooke, R.D., Leavitt P.R.1998. Direct and interactive effects of allochthonous dissolved organic matter, inorganic nutrients and ultraviolet radiations on an alpine littoral food web. Limnol. Oceanogr. 43:1065-1081.

 

Visser, P.M., Poos, J.J., Scheper, B.B., Boelen, P. and van Duyl, F.C. 2002. Diurnal variations in depth profiles of UV-induced DNA damage and inhibition of bacteriolplancton production in tropical coastal waters. Mar. Ecol. Prog. Ser. 228:25-33.

 

Wängberg, S.-Å., Selmer, J.-S., and K. Gustavson. 1996. Effects of UV-B radiation on biomass and composition in marine phytoplankton communities. Sci. Mar. 60:81-88.

 

Williams, P.J.L. 1995. Evidence for the seasonal accumulation of carbon-rich dissolved organic material, its scale in comparison with changes in particulate material and the consequential effect on net C N assimilation ratios. Mar. Chem. 51:17-29.

 

Xenopoulos, M.A., and D.F. Bird. 1997. Effect of acute exposure to hydrogen peroxide on the production of phytoplncton and bacterioplancton in a mesohumic lake. Photochem. Photobiol. 66:471-478.

 

Zhou, X. and K. Mopper 1997. Photochemical production of low-molecular weight carbonyl compounds in seawater and surface microlayer and their air-sea exchange. Mar. Chem. 56:201-213.

 


RÉFÉRENCES BIBLIOGRAPHIQUES

 

 

Références bibliographiques du responsable et de l'équipe, en particulier sur le sujet de la demande (trois dernières années).

 

Les articles en relation avec le thème UV sont soulignés

 

 

 

Soumis


 

Touratier, F, Carlotti, F, and Gorsky, G. Individual growth model for the appendicularian Oikopleura dioica. Soumis dans Mar. Ecol. Prog. Series.

 

Touratier, F., Field, J.G., and Moloney, C.L. Simulated carbon and nitrogen flows of the planktonic food web during an upwelling relaxation period in St Helena Bay (southern Benguela ecosystem). Soumis dans Progress in Oceanography.

 

Touratier, F, and Goyet C. Hydrological properties and distribution of the tracer “CAO”. Soumis dans Geophys. Res. Let.

2002, sous presse


Bhaya D., Dufresne A., Vaulot D., and Grossman A.R. 2002. Analysis of the hli gene family in marine and freshwater cyanobacteria. FEMS Microbiol. Lett.  Sous presse

Aumont, O., Belviso, S., and Monfray, P.  2002. Dimethylsulfoniopropionate (DMSP) and dimethylsulfide (DMS) sea surface distributions simulated from a global ocean carbon model. J. Geophys. Res. 107: C4, 10.

Bianchi, A., Calafat, A., De Wit, R., GarciN, J., Tholosan, O., Cacho, I., Canals, M., Fabres, J., Grout, H., Masqué, P., Sanchez-Cabeza, J. A. and R. Sempéré.  Microbial activities at the deep water-sediment boundary layer in two high productivity systems of the Alboran Sea (Western Mediterranean) : The Almeria Oran Front and the Malaga upwelling. Oceanologica Acta, In Press.

 

Bopp, L., Aumont, O., Belviso, S., and Monfray, P.  2002. Potential impact of climate change on marine dimethylsulfide (DMS) emissions.  Tellus. sous presse.

Boucher, O., Moulin, C., Belviso, S., Aumont, O., Bopp, L., Cosme, E., von Kuhlmann, R., Lawrence, M.G., Pham, M., Reddy, M.S., Sciare, J., and Venkataraman, C.  2002. Sensitivity study of dimethylsulfide (DMS) atmospheric concentrations and sulphate aerosol indirect radiative forcing to the DMS source representation and oxidation. Atmos. Chem. Phys. Discuss. 2:1181-1216 

Claustre H., Bricaud A., Babin M., Bruyant F., LeGall F. and Partensky F. 2002. Diel variations in Prochlorococcus optical properties. Limnol. Oceanogr. Sous presse

 

Christaki U, Giannakourou A, Van Wambeke F and Gregori G. 2001. Nanoflagellate predation on auto- and heterotrophic picoplankton in the oligotrophic Mediterranean Sea J. Plankt. Res. 23 : 1297 - 1310

 

Cuny, P., Marty, J-C., Chiaverini, J., Vescovali, I., Raphel, D. and Rontani, J-F. 2002. One-year seasonal survey of the chlorophyll photodegradation process in the Northwestern Mediterranean sea. Deep Sea Res.II 49:1987-2005.

 

Ghiglione, J.F., A. Richaume, L. Philippot, and R. Lensi. 2002. Relative involvement of nitrate and nitrite reduction in the competitiveness of Pseudomonas fluorescens in the rhizosphere of maize under non-limiting nitrate conditions. FEMS Microbiol. Ecol. (in press).

 

Gitai Y, Sharp J, Marie D, Häse C, and Genin A. 2002. In situ feeding and element removal in the coral-reef sponge Theonella swinhoei: bulk DOC is the major source for carbon. Limnol. Oceanogr. Sous presse

 

Holtzendorff J., Marie D., Post A. F., Partensky F., Rivlin A. and Hess W. R. 2002. Expression of ftsZ in natural Prochlorococcus populations of the Red Sea, as analyzed by real-time RT-PCR. Environ. Microbiol. Sous presse

 

Laloui W., Palinska K.A., Rippka R., Partensky F., Tandeau de Marsac N., Herdman M. and Iteman I. 2002. Genotyping of axenic and non‑axenic isolates of the genus Prochlorococcus and the "OMF-Synechococcus clade" by size, sequence analyses or RFLP of the Internal Transcribed Spacer of the ribosomal operon. Microbiolology. 148:453-455

 

Lemée R., Rochelle-Newall E., Van Wambeke F, Pizay M-D, Rinaldi P, andGattuso J-P. 2002. Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea. Aquat. Microbial Ecol. sous presse

 

Lindell, D., Erdner D., Marie D., Prasil O., Koblizek M., LeGall F., Rippka R., Partensky F., Scanlan D.J. and Post A.F.  2002. Contrasting expression of ntcA and amt in Prochlorococcus sp. strain PCC 9511. J. Phycol. Sous presse

 

Marchand D., Grossi V., Hirchler-Réa A. and Rontani J-F. 2002. Regiospecific enzymatic oxygenation of cis-vaccenic acid during aerobic senescence of the halophilic purple sulfur bacterium Thiohalocapsa halophila. Lipids. 37: 541-548.

 

Marchand D. and Rontani J-F. 2002. Visible light-induced oxidation of lipid components of purple sulfur bacteria : a significant process in microbial mats. Org. Geochem. (sous presse)

 

Moutin T, Thingstad TF, Van Wambeke F, Marie D, Slawyk G, Raimbault P and Claustre H. 2002. Does competition for nanomolar phosphate supply explain the predominance of the cyanobacterium Synechococcus? Limnol.  Oceanogr. 47: 1562–1567.

 

Panagiotopoulos, C. Sempéré, R, Obernosterer,  I., Striby, L., Goutx, F, Charrière, B. and F. Van Wambeke. 2002. Microbial decomposition of large particles in southern Ocean by using in vitro incubation experiments. Org. Geochem. 33: 985-1000.

 

Partensky F. and Garczarek L. 2002. The photosynthetic apparatus of Chlorophyll b- and d-containing Oxychlorobacteria. In: Photosynthesis in Algae. Larkum, A.W.D. (Ed.). Advances in Photosynthesis Series. Vol. 7. Kluwer Academic Publ., Dordrecht.

 

Rontani, J-F and Volkman J.K. 2002. Phytol degradation products as biogeochemical tracers in aquatic environments – a review.  Org. Geochem. (Sous presse).

 

Sempéré, R., R. Lafont, Marroni, B., Panagiotopoulos, C., and F. Van Wambeke. 2002. Dynamic of Total organic carbon in Aegean Sea (Mediterranean Sea). J. Mar. Syst. 33-34: 355-364.

 

Siokou-Frangou I, Bianchi M, Christaki U, Christou E, Giannakourou A, Gotsis O, Ignatiades L, Pagou K, Pitta P, Psarra S, Souvermezoglou E, Van Wambeke F and Zervakis V. 2002. Organic carbon partitionning and carbon flow along a gradient of oligotrophy in the Aegean Sea (Mediterranean Sea). J. Mar. Syst. 33-34:335-353.

 

TOOLAN, T., C. LANGDON, J.J. McCARTHY, and C. GOYET.  Coulometric measurement of microbial respiration rates in seawater and respiratory quotient values. Appl. Environ. Microbiol. (in press)

 

Van Wambeke, F, Christaki U, Giannakourou A, Moutin T and Souvemerzoglou K. 2002. Longitudinal and vertical trends of bacterial limitation by phosphorus and carbon in the Mediterranean Sea. Microb. Ecol. 43:119-133.

 

Van Wambeke, F, Heussner S, Diaz F, Raimbault P and Conan P. 2002. Small-scale variability in the coupling/uncoupling of bacteria, phytoplankton and organic carbon fluxes along the continental margin of the Gulf of Lions, Northwestern Mediterranean Sea. J. Mar. Syst. 33-34:411-429.

 

 

2001


 

Arraes-Mescoff, R., Coppola, L., Roy-Barman, M., Souhaut, M., Tashikawa, K., Jeandel, C., R. Sempéré  and S. C. Yoro  2001. The behavior of Al, Mn, Ba, REE and Th isotopes during in vitro bacterial degradation of large marine particles. Mar. Chem. 73:1-19.

 

Belviso, S., Claustre, H., and Marty, J.-C.  2001. Evaluation of the utility of chemo-taxonomic pigments as a surrogate for particulate DMSP.  Limnol. Oceanogr. 46: 989-995.

BERNARD, L., C. COURTIES, G. MUYZER, and P. LEBARON. 2001. A new approach combining cellular and molecular techniques with cell sorting to relate genetic and physiological diversity within natural communities. Cytometry 43: 256-268.

 

Bibby T.S., Nield J., Partensky F.,  and Barber J. 2001. Antenna ring around photosystem I. Nature 413: 590.

 

Blain, S., Treguer, P., Belviso, S., Bucciarelli, E., Charriaud, E., Denis, M., Fiala, M., Jézéquel, V., Le Fèvre, J., Mayzaud, P., Marty, J.-C., Park, Y., Razouls, S., and SempÉrÉ, R.  2001. A biogeochemical study of the island mass effect in the context of the iron hypothesis : Kerguelen Islands, Southern Ocean.  Deep-Sea Res. 48: 163-187.

Brussaard, C.P.D., Marie D., and Bratbak G. 2000. Flow cytometric detection of viruses. J. Virol. Meth. 85: 175-182.

 

Brussaard, C.P.D., Marie D., Thyrhaug R., and Bratbak G. 2001. Flow cytometric analysis of phytoplankton viability following viral infection. Aquat. Microb. Ecol. 26: 157-166.

 

Bruyant, F., Babin M., Sciandra A., Marie D., Genty B., Claustre H., Blanchot J., Bricaud A., Rippka R., Boulben and Partensky F. 2001. An axenic turbidostat of Prochlorococcus strain PCC 9511 with a simulator of natural light regimes. J. Appl. Phycol. 13: 135-142.

 

COATANOAN, C., C. GOYET, N. GRUBER, C.L. SABINE, and M. WARNER. 2001. Comparison of the two approaches to quantify anthropogenic CO2 in the ocean: Results from the northern Indian Ocean. Global Biogeochem. Cycle 15: 11-25.

 

Dafner, E., R. Sempéré, and H. Bryden.  2001. Total organic carbon distribution through the Strait of Gibraltar in September 1997, Mar. Chem. 73:233-252.

 

Dafner, E., Gonzales-Davila, M., Santana-Casiano, J. M. and R. Sempéré . 2001. Total organic and inorganic carbon exchange through the Strait of Gibraltar in September 1997. Deep Sea Res. 48:1217-1236.

 

El Alaoui S., Diez J., Humanes L., Toribio F., Partensky F. and García-Fernández J.M. 2001. In vivo regulation of glutamine synthetase activity in the marine cyanobacterium Prochlorococcus (Oxyphotobacteria). Appl. Environ. Microbiol. 67:2202-2207.

 

Garczarek, L., Hess W.R., Holtzendorff J., van der Staay G.W.M. and Partensky F. 2000. Multiplication of antenna genes as a major adaptation mechanism in a marine prokaryote. Proc. Nat. Acad. Sci. U.S.A. 97: 4098-4101.

 

Garczarek, L., Partensky F., Holtzendorff J., Babin M., Mary I., Thomas J.-C. et Hess W.R. 2001. Differential expression of antenna and core genes in Prochlorococcus PCC 9511 grown under a light-dark cycle. Environ. Microbiol. 33: 168-175.

 

Garczarek, L., van der Staay G.W.M., W. R. Hess, Legall F. and Partensky F. 2001. Expression and phylogeny of the multiple antenna genes of the low-light adapted strain Prochlorococcus SS120 (Oxyphotobacteria). Plant Mol. Biol. 46:683-693.

 

Grégori, G., Citterio S., Ghiani A., Labra M., Sgorbati S., Brown S. and Denis M. 2001. Resolution of viable and membrane-compromised bacteria in freshwater and marine waters based on analytical flow cytometry and nucleic acid double staining. Appl. Environ. Microbiol. 67: 4662-4670.

 

Grout, H., Sempéré, R., Thill, A., Calafat, A., Prieur, L. and M. Canals, 2001. Morphological and chemical variability of colloids in the Almeria-Oran Front in the eastern Alboran Sea (SW Mediterranean Sea) : evidence by means of analytical electron microscopy. Limnol. Oceangr. 46:1347-1357.

 

Holtzendorff, J., Partensky F., Jacquet S., Bruyant F., Marie D., Garczarek L., Mary I., Vaulot D. and Hess W.R. 2001. Periodic expression of cell cycle-related genes in synchronized cultures of Prochlorococcus PCC 9511. J. Bact. 183:915-920.

 

Jacquet, S., Partensky F., Lennon J.-F. and Vaulot D. 2001. Diel patterns of picoplankton in culture. J. Phycol. 37:357-359.

 

Jacquet, S., Partensky F., Marie D., Casotti R. and Vaulot D. 2001. Cell cycle regulation by light in Prochlorococcus. Appl. Environ. Microbiol. 67: 782-790.

 

Lebaron, P., H. Agogué, C. Courties, P. Servais, and F. Joux. 2001. Does the nucleic acid content of indivisdual bacterial cells allow to discriminate the most active cells in aquatic environments? Appl. Environ. Microb. 67: 1775-1782.

 

LEBARON, P., L. BERNARD, P. SERVAIS, M. TROUSSELLIER, C. COURTIES, G. MUYZER, T. GUINDULAIN, H. SCHAFER, R. PUKALL, E. STACKEBRANDT, and J. VIVES-REGO. 2001 Microbial community dynamics in Mediterranean nutrient enriched seawater mesocosms : changes in abundances, activity and composition. FEMS Microbiol. Ecol. 34: 255-266

 

Marie, D., Simon N., Guillou, L., Partensky F. and Vaulot D. 2000. DNA, RNA analysis of phytoplankton by flow cytometry. In: Current Protocols in Cytometry. John Wiley & Sons, Inc.11.12.1-18.

 

Marchand, D., and Rontani, J-F. 2001. Characterization of photooxidation and auto-oxidation products of phytoplanktonic monounsaturated fatty acidsin marine particulate matter and Recent sediment samples. Org.  Geochem. 32 :287-304.

 

Mouzdahir, A., Grossi, V., Bakkas, S., and Rontani, J-F. 2001. Photodegradation of long-chain alkenes in senescent cells of Emiliania huxleyi and Nannochloropsis salina. Phytochem. 56 : 677-684 .

 

OBERNOSTERER, I., SEMPÉRÉ, R., and G. J. HERNDL. 2001. Ultraviolet radiation a reversal of  the bioavailability of DOM  to marine bacterioplankton. Aquat. Microb. Ecol. 24: 61-68.

 

PANAGIOPOULOS, C., R. SEMPÉRÉ, R. LAFONT, and P. KERHERVÉ. 2001. Effects of temperature in the determination of monosaccharides by using an anion-exchange column. J. Chromato. A, 920: 13-22.

 

Rippka, R, Coursin T, Hess WR, Lichtlé C, Scanlan DJ, Palinska KA, Iteman I, Partensky F., Tandeau de Marsac N, Houmard J and Herdman M. 2000. Prochlorococcus marinus Chisholm et al. 1992, subsp. nov. pastoris, strain PCC 9511, the first axenic chlorophyll a2/b2-containing cyanobacterium (Oxyphotobacteria). Inter. J. Syst. Evolut. Bact. 50:1833-1847.

 

Rontani, J-F. 2001. Visible light-dependent degradation of lipidic phytoplanktonic components during senescence : a review. Phytochem. 58 : 187-202.

 

SCHAFER, H., L. BERNARD, P. LEBARON, C. COURTIES, P. SERVAIS, M. TROUSSELLIER, T. GUINDULAIN, R. PUKALL, E. STACKEBRANDT, J. VIVES-REGO, and G. MUYZER. 2001 Microbial community dynamics in Mediterranean nutrient enriched seawater mesocosms : changes in the genetic diversity and identity of bacterial populations. FEMS Microbiol. Ecol. 34: 243-253.

 

Sciare, J., Baboukas, E., Kanakidou, M., Belviso, S., Bardouki, H., and Mihalopoulos, N. 2000. Spatial and temporal variability of atmospheric sulfur containing gases and particles during the ALBATROSS campaign.  J. Geophys. Res. 105: 14433-14448.

Servais, P., H. Agoghé, C. Courties, F. Joux, and P. Lebaron. 2001. Are the actively respiring cells (CTC+) those responsible of bacterial production in aquatic environments ? FEMS Microb. Ecol. 35: 171-179.

 

Steglich, C., Behrenfeld M., Koblizek M., Claustre H., Penno S., Prasil O., Partensky F. and Hess W.R. 2001. Nitrogen deprivation strongly affects Photosystem II but not phycoerythrin level in the divinyl-chlorophyll b-containing cyanobacterium Prochlorococcus marinus. Biochimica Biophysica Acta. Sous presse

 

Touratier, F., Field, J.G., and Moloney, C.L. 2001. A stoichiometric model relating growth substrate quality (C:N:P ratios) to N:P ratios in the products of heterotrophic release and excretion. Ecological Modelling, 139, 265-291.

 

van der Staay, G.W.M., Moon-van der Staay S.Y., Garczarek L. and Partensky F. 2000. Rapid evolutionary divergence of photosystem I core subunits PsaA and PsaB in the marine prokaryote Prochlorococcus. Photosynth. Res. 65:131-139

 

VAN WAMBEKE, F., M. GOUTX, L. STRIBY, R. SEMPÉRÉ, and F. VIDUSSI. 2001. Bacterial dynamics during the transition from spring bloom to oligotrophy in the Northwestern Mediterranean Sea. Relationships with particulate detritus and dissolved organic matter. Mar. Ecol. Prog. Ser. 212: 89-105.

 

Van Wambeke, F, Christaki U, Bianchi M, Psarra S and Tselepides A, 2001. Heterotrophic bacterial production in the Cretan Sea (NE Mediterranean). Progr. Oceanography 46: 205-216.

 

 

2000


 

Aubert, C. and Rontani J-F. 2000. Perfluoroalkyl ketones : novel derivatization products for the sensitive determination of fatty acids by gas chromatography-mass spectrometry in EI and NCI modes. Rapid Commun. Mass Spectrom. 14: 960-966.

 

BAUDART, J., J. Grabulos, J-P Barusseau, and P. LEBARON. 2000. Comparison of Salmonella spp and fecal coliforms loads from point vs. Nonpoint pollution sources. J. Environ. Qual. 29-1: 241-250.

 

BAUDART, J., K. LEMARCHAND, A. BRISABOIS, and P. LEBARON. 2000 Diversity of Salmonella strains isolated in the aquatic environment as determined by serotyping and amplification of the ribosomal DNA spacer regions. Appl. Environ. Microbiol. 66: 1544-1552.

 

Belviso, S., Christaki, U., Vidussi, F., Marty, J.-C., Vila Reig, M., and Delgado, M.  2000. Diel variations of the DMSP-to-chlorophyll a ratio in Northwestern Mediterranean surface waters. J. Mar. Syst. 25: 119-128.

Belviso, S., Morrow, R., and Mihalopoulos, N.  2000. An Atlantic meridional transect of surface water DMS concentrations with 10-15 km horizontal resolution and close examination of ocean circulation. J. Geophys. Res. 105: 14423-14431.

BERNARD, L., C. COURTIES, P. SERVAIS, M. TROUSSELLIER, M. PETIT, and P. LEBARON 2000. Relationships among bacterial cell size, productivity and genetic diversity in aquatic environments using cell sorting and flow cytometry. Microb. Ecol. 40: 148-158.

 

BERNARD, L., H. SCHAFER, F. JOUX, C. COURTIES, G. MUYZER, and P. LEBARON. 2000. Genetic diversity of total, active and culturable marine bacteria in coastal waters. Aquat. Microb. Ecol. 23: 1-11.

 

Brussaard, C.P.D., Marie D., and Bratbak G. 2000. Flow cytometric detection of viruses. J. Virol. Meth. 85: 175-182.

 

DIAZ, F., RAIMBAULT P., and CONAN P. 2000. Carbon and nitrogen utilization by phytoplankton during spring in a Mediterranean coastal zone (Gulf of Lions): evidence of small scale variability. Cont. Shelf Res. 20: 975-996

 

Garczarek, L., Hess W.R., Holtzendorff J., van der Staay G.W.M. and Partensky F. 2000. Multiplication of antenna genes as a major adaptation mechanism in a marine prokaryote. Proc. Nat. Acad. Sci. U.S.A. 97: 4098-4101.

 

Ghiglione, J.F., F. Gourbière, P. Potier, L. Philippot, and R. Lensi. 2000. Role of the respiratory nitrate reductase in ability of Pseudomonas fluorescens YT101 to colonize the rhizosphere of maize. Appl. Environ. Microbiol. 66: 4012-4016.

 

Grossi ,V., Raphel D., Aubert C. et Rontani J-F. 2000. The effect of growth temperature on the long-chain alkenes composition of the marine coccolithophorid Emiliania huxleyi. Phytochem. 54:393-399.

 

JOUX, F., and P. LEBARON. 2000. Use of fluorescent probes to assess physiological functions of bacteria at the single cell level. Microb. Infect. 2: 1523-1535.

 

KORTZINGER, A., L. MINTROP, D.W.R. WALLACE, K.M. JOHNSON, C. NEILL, B. TILBROOK, P. TOWLER, H.Y. INOUE, M. ISHII, G. SHAFFER, R.F. TORRES SAAVEDRA, E. OHTAKI, E. YAMASHITA, A. POISSON, C. BRUNET, B. SCHAUER, C. GOYET, and G. EISCHEID. 2000.  The international at-sea intercomparison of fCO2 systems during the R/V Meteor cruise 36/1 in the North Atlantic Ocean. Mar.Chem. 72: 171-192.

 

LEBARON, P., L. BERNARD, J. BAUDARD, and C. COURTIES. 2000. The ecological role of VBNC cells in the marine environment. Proceedings of the Eighth International Symposium on Microbial Ecology ISME8, Halifax, 9-14 Aôut 1998; Vol 2: 737-743.

 

Marie, D., Simon N., Guillou, L., Partensky F. and Vaulot D. 2000. DNA, RNA analysis of phytoplankton by flow cytometry. In: Current Protocols in Cytometry. John Wiley & Sons, Inc.11.12.1-18.

 

PARTHUISOT, N., P. CATALA, K. LEMARCHAND, and P. LEBARON. 2000. Evaluation of ChemChrome V6 for bacterial viability assessment in waters. J. Appl. Microbiol. 89: 370-380.

 

Rippka, R, Coursin T, Hess WR, Lichtlé C, Scanlan DJ, Palinska KA, Iteman I, Partensky F., Tandeau de Marsac N, Houmard J and Herdman M. 2000. Prochlorococcus marinus Chisholm et al. 1992, subsp. nov. pastoris, strain PCC 9511, the first axenic chlorophyll a2/b2-containing cyanobacterium (Oxyphotobacteria). Inter. J. Syst. Evolut. Bact. 50:1833-1847.

 

Rontani J-F.,  and Marchand D. 2000 D5-Stenol photoproducts of phytoplanktonic origin : a potential source of hydroperoxides in marine sediments ? Org. Geochem. 31: 169-180.

 

Rontani, J-F., Perrote S. andCuny P.  2000. Can a high chlorophyllase activity bias the use of phytyldiol versus phytol ratio (CPPI) for the monitoring of chlorophyll photooxidation in seawater ? Org. Geochem. 31: 91-99.

 

SABINE, C.L., R. WANNINKHOF, R.M. KEY, C. GOYET, F. MILLERO, G. EISCHEID, and D. O'SULLIVAN. 2000. Seasonal CO2 fluxes in the Tropical and Subtropical Indian Ocean. Mar. Chem. 72: 33-53.

 

Sciare, J., Baboukas, E., Kanakidou, M., Belviso, S., Bardouki, H., and Mihalopoulos, N. 2000. Spatial and temporal variability of atmospheric sulfur containing gases and particles during the ALBATROSS campaign.  J. Geophys. Res. 105: 14433-14448.

SEMPÉRÉ, R., B. CHARRIÈRE, F. VAN WAMBEKE,  and G. CAUWET. 2000. Carbon inputs of the Rhône River to the Mediterranean Sea : Biogeochemical implications.  Global Biogeochem. Cycles 14: 669-681.

 

SEMPÉRÉ, R., S.C. YORO, F. VAN WAMBEKE, and B. CHARRIÈRE. 2000. Microbial decomposition of large organic particles in northwestern Mediterranean Sea. Mar. Ecol. Prog. Ser. 198: 61-72.

 

Touratier, F., Legendre, L.,  and Vézina, A. 2000. Northeast Water Polynya 1993: construction and modelling of a time series representative of the summer anticyclonic gyre pelagic ecosystem. J. Mar. Syst. 27:53-93.

 

van der Staay, G.W.M., Moon-van der Staay S.Y., Garczarek L. and Partensky F. 2000. Rapid evolutionary divergence of photosystem I core subunits PsaA and PsaB in the marine prokaryote Prochlorococcus. Photosynth. Res. 65:131-139

 

VIVES-REGO, J., P. LEBARON, and G. NEBE-VON CARON. 2000. Current and future applications of flow cytometry in aquatic microbiology. FEMS Microbiol. Rev. 24: 429-448.

 

 

1999


 

Bricaud, A., Allali K., Morel A, Marie, D, Veldhuis MJW, Partensky F. and Vaulot D. 1999. Chlorophyll-specific absorption coefficients and associated efficiency factors for Prochlorococcus sp.: responses to, and kinetics of photoacclimation. Mar. Ecol. Prog. Ser. 188: 21-32.

 

Cailliau, C., Belviso, S., Goutx, M., Bedo, A., Park, Y., and Charriaud, E. 1999. Sedimentation pathways in the Indian sector of the Southern Ocean during a production regime dominated by regeneration. Mar. Ecol. Progr. Ser. 190: 53-67.

CATALA, P., PARTHUISOT N. and LEBARON P. 1999. Effectiveness of CSE  to counterstain bacterial cells stained with viability dyes. FEMS Microbiol. Lett. 178: 219-226.

Clays-Josserand, A., J.F. Ghiglione, L. Philippot, P. Lemanceau, and R. Lensi. 1999. Effect of soil type and plant species on the fluorescent pseudomonads nitrate dissimilating community. Plant and Soil 209: 275-282.

CONAN, P., TURLEY C.M., STUTT E., PUJO-PAY M., VAN WAMBEKE F. 1999. Relationship between phytoplankton efficiency and the proportion of bacterial production to primary production in the Mediterranean Sea. Aquat. Microb. Ecol. 17: 131-144.

 

Cuny, P. and Rontani J-F. 1999. On the widespread occurrence of 3-methylidene-7,11,15-trimethylhexadecan-1,2-diol in the marine environment : a specific isoprenoid marker of chlorophyll photodegradation. Mar. Chem. 65 : 155-165.

 

Cuny, P., Romano J-C., Beker B. and Rontani J-F. 1999. Comparison of the photodegradation rates of chlorophyll chlorin ring and phytol side-chain in phytodetritus : is the phytyldiol versus phytol ratio (CPPI) a new biogeochemical index ?  J. Exp. Mar. Biol. Ecol. 237 : 271-290..

 

Dafner, E., Sempéré, R., Yoro, S. C., Cauwet, G., Agatova, A. 1999. Application of the wet oxidation method for dissolved organic carbon analysis in the Southern Ocean. C. R. Acad. Sci. Paris. 329 : 345-350.

 

Dafner, E., Sempéré, R., N. Gonzales, Gomez, F. and M. Goutx, M. 1999. Cross Slope variations of dissolved organic carbon in the Gulf of Cadiz, NE Atlantic Ocean  (February, 1998). Mar. Ecol. Progr. Ser. 189 : 301-306.

 

FAJON, C., G. CAUWET, P. LEBARON, S. TERZIC, M. AHEL, A. MALEJ, P. MOZETIC, and V. TURK. 1999. Accumulation of polysaccharides in planktonic cells and bacterial response during a controlled experiment. FEMS Microb. Ecol. 29: 351-364.

 

Ghiglione, J.F., L. Philippot, P. Normand, R. Lensi, and P. Potier. 1999. Disruption of narG, the gene encoding the catalytic subunit of the respiratory nitrate reductase A, also affects nitrite respiration in Pseudomonas fluorescens YT101. J. Bacteriol. 181: 5099-5102.

 

GOYET, C., C. COATANOAN, G. EISCHEID, T. AMAOKA, K. OKUDA, R. HEALY, and S. TSUNOGAI. 1999. Spatial variation of total CO2 and total alkalinity in the northern Indian Ocean: A novel approach for the quantification of anthropogenic CO2 in seawater. J.  Mar. Res. 57: 135-163.

 

Guillou, L., Moon-van der Staay S.Y., Claustre H., Partensky F. and Vaulot D. 1999.  Diversity and abundance of Bolidophyceae (Heterokonta) in oceanic waters. Appl. Environ. Microbiol. 65: 4528-4536.

 

Hess, W.R., Steglich, C., Lichtlé C., and Partensky, F. 1999. The phycoerythrins of Prochlorococcus marinus are associated to the thylakoid membranes and are encoded by a single large gene cluster. Plant Mol. Biol. 40:507-521.

 

JOUX, F., W.H. JEFFREY, P. LEBARON, and D. MITCHELL. 1999. Diversity of responses among marine bacteria during UV-B exposure and subsequent recoveries. Appl. Environ. Microbiol. 65: 3820-3827.

 

KELLEY, C.A, J.D. PAKULSKI, S.H. SANDVIK, R.B. COFFIN, R.C. DOWNER, Jr., P. AAS, M.M. LYONS, and W.H. JEFFREY1999.  Phytoplanktonic and bacterial carbon pools and productivities in the Gerlache Strait, Antarctica during early austral spring.  Microb. Ecol. 38: 296-305. 

 

LANTOINE, F., and J. NEVEUX. 1999. Phycoerythrins in the sea: abundance and spectral diversity. In Marine cyanobacteria, Charpy L & Larkum AWD (eds) Bulletin de l'Institut Océanographique, Monaco, special issue N° 19, 443-450

 

LEBARON, P., P. SERVAIS, M. TROUSSELLIER, C. COURTIES, J. VIVES-REGO, G. MUYZER, L. BERNARD, T. GUINDULAIN, H. SCHAFER, R. PUKALL, E. STACKEBRANDT. 1999. Changes in bacterial community structure in seawater mesocosms differing in their nutrient status. Aquat. Microbial. Ecol. 19: 255-267.

 

Marie, D., Brusaard C., Partensky F. and Vaulot D. 1999. Flow cytometric analysis of phytoplankton, bacteria and viruses. In: Current Protocols in Cytometry. Robinson J.P. et al. (Eds.), John Wiley & Sons, Inc. Suppl. 10, Unit 11.11, pp. 1-15.

 

NEVEUX, J., F. LANTOINE, D. VAULOT, D. MARIE, and J. BLANCHOT. 1999. Phycoerythrins in the southern tropical and equatorial Pacific Ocean: Evidence for new cyanobacterial types. J. Geophys. Res. 104: 3311-3321.

 

Partensky, F., Blanchot J. ,and Vaulot D. 1999. Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters : a review. In: Marine Cyanobacteria, Charpy L. et Larkum A.W.D. (Eds). Bull. Inst. Océanogr., Monaco, Numéro spécial 19: 457-476.

 

Partensky, F., Hess W.R. ,and Vaulot D. 1999. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol. Mol. Biol. Rev. 63:106-127.

 

PUKALL, R., D. BUNTEFUB, A. FRÜHLING, M. ROHDE, R. KROPPENSTEDT, J. BURGHARDT, P. LEBARON, L. BERNARD and E. STACKEBRANDT. 1999. Sulfitobacter mediterranaeus sp. nov., a new sulfite-oxidizing gram-negative bacterium of the alpha subclass of the class Proteobacteria. Int. J. Syst. Bacteriol. 49: 513-519.

 

PUKALL, R., O. PÂUKER, D. BUNTEFUB, G. ULRICHS, P. LEBARON, L. BERNARD, T. GUINDULAIN, J. VIVES-REGO, and E. Stackebrandt. 1999. High sequence diversity of Alteromonas macleodii-related cloned and cellular 16S rDNA from a Mediterranean seawater mesocosm experiment. FEMS Microbiol. Ecol. 28: 335-344.

 

RAIMBAULT, P., G. SLAWYK, B. BOUDJELLAL, C. COATANOAN, P. CONAN, B. COSTE, N. GARCIA, T. MOUTIN, and M. PUJO-PAY. 1999. Carbon and nitrogen uptake and export in the equatorial Pacific at 105W : Evidence of an efficient regenerated production cycle. J. Geophys. Res. 104: 3341-3356.

 

Raimbault, P., Pouvesle, W., Diaz, F., Garcia, N and R. Sempéré. 1999. Feasibility of using wet-oxidation and automated colorimetry for simultaneous determination of organic carbon, nitrogen and phosphorus dissolved in seawater. Mar. Chem. 66:161-169.

 

SERVAIS, P., C. COURTIES, P. LEBARON, and M. TROUSSELLIER. 1999. Coupling bacterial activity measurements with cell sorting by flow cytometry. Microb. Ecol. 38: 180-189.

 

Strehl, B., Holtzendorff, J., Partensky, F., and Hess W.R. 1999. A small and compact genome in the marine cyanobacterium Prochlorococcus marinus CCMP 1375: lack of an intron in the gene for tRNA(Leu)UAA and a single copy of the rRNA operon. FEMS Microbiol. Lett.

 

Touratier, F., Legendre, L., and Vézina, A. 1999a. Model of bacterial growth influenced by substrate C:N ratio and concentration. Aquatic Microbial Ecology, 19, 105-118.

 

Touratier, F., Legendre, L., and Vézina, A. 1999b. Model of copepod growth influenced by the food C:N ratio and concentration, under the hypothesis of strict homeostasis. J. Plank. Res. 21:1111-1132.

 

TROUSSELLIER, M., C. COURTIES, P. LEBARON, and P. SERVAIS. 1999. Flow cytometric discrimination of bacterial subpopulations in seawater based on SYTO 13 staining of nucleic acids. FEMS Microbiol. Ecol. 29: 319-330.

 

van der Staay, G.W.M., and Partensky F. 1999. The 21 kDa protein associated with Photosystem I in Prochlorococcus marinus is the PsaF protein (AJ131438). Plant Physiol. 120, p. 339

 

 

 
 
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