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1 Dolan, J. (2005). An introduction to the biogeography of aquatic microbes. Marine Ecology Progress Series, Vol. 41: 39-48, 2005 Dolan_et_al.AME_05.pdf
2 Dolan, J. (2006). Re-Discovered Beauty - New Images for Old, Descriptions - Tropical Tintinnids of the Genus, Xystonellopsis (Ciliophora, Tintinnia). Protist, 57, 251-253. Dolan_Protist_06.pdf
3 Duhamel, S, Zeman, F. and T. Moutin (2006) A dual labelling method for the simultaneous measurement of dissolved inorganic carbon and phosphate uptake by marine planktonic species. Limnology and Oceanography Methods, 4, 416-425 Duhamel_et_al_LO_Met_06.pdf
4 Gomez, F., 2006. The Dinoflagellate Genera Brachidinium, Asterodinium, Microceratium and Karenia in the Open SE Pacific Ocean. Algae 21, 445-452. Gomez_Algae_06.pdf
5 Loisel, H., Nicolas, J.M., Sciandra, A., Stramski, D., and Poteau, A. (2006). Spectral dependency of optical backscattering by marine particles from satellite remote sensing of the global ocean. Journal of Geophysical Research, 111, C09024, doi:10.1029/2005JC003367, Loisel_et_al _JGR_06.pdf
6 Charpentier, J., L. Farias, N. Yoshida, N. Boontanon, and P. Raimbault (2007). Nitrous oxide distribution and its origin in the central and eastern South Pacific Subtropical Gyre. Biogeosciences, 4, 729-741.  
7 Dolan, J.R., M. E. Ritchie, and J. Ras (2007) The "neutral" community structure of planktonic herbivores, tintinnid ciliates of the microzooplankton, across the SE Tropical Pacific Ocean. Biogeosciences, 4, 297-310.  
8 Duhamel, S., T. Moutin, F. Van Wambeke, B. Van Mooy, P. Rimmelin, P. Raimbault, and H. Claustre (2207). Growth and specific P-uptake rates of bacterial and phytoplanktonic communities in the Southeast Pacific (BIOSOPE cruise). Biogeosciences, 4, 941-956,  
9 Gomez, F. (2007). Gymnodinioid dinoflagellates (Gymnodiniales, Dinophyceae) in the open Pacific Ocean. Algae, 22, 273-286 Gomez_Algae_07.pdf
10 Gomez, F. (2007). Nuevo registro del dinoflagelado aberrante Craspedotella pileolus Kofoid, 1905 (Dinophyceae: Noctilucales) en el Oceano Pacífico. Revista de Biología Marina y Oceanografía 42, 83-87 Gomez_RBMO_07.pdf
11 Gomez, F. 2007. On the consortium of the tintinnid Eutintinnus and the diatom Chaetoceros in the Pacific Ocean. Marine Biology, 151, 1899-1906. Gomez_Mar._Biol._07.pdf
12 Gomez, F. (2007). The consortium of the protozoan Solenicola setigera and the diatom Leptocylindrus mediterraneus in the Pacific Ocean. Acta Protozoologica, 46, 15-24 Gomez_Acta_Protozoologica_07.pdf
13 Gomez, F. and K. Furuya (2007). Kofoidinium, Spatulodinium and other kofoidiniaceans (Noctilucales, Dinophyceae) in the Pacific Ocean. European Journal of Prostitology, 43, 115-124 Gomez_and_Furuya_EJP_07.pdf
14 Gomez, F., H. Claustre, P. Raimbault, and S. Souissi (2007). Two High-Nutrient Low-Chlorophyll phytoplankton assemblages: the tropical central Pacific and the offshore Perou-Chile Current. Biogeosciences, 4, 1101-1113, 2007  
15 Grob, C., O. Ulloa, H. Claustre, Y. Huot, G. Alarcon, and D. Marie (2007). Contribution of picoplankton to the total particulate organic carbon concentration in the eastern South Pacific. Biogeosciences, 4, 837-852.  
16 Huot, Y., M. Babin, F. Bruyant, C. Grob, M. S. Twardowski, and H. Claustre (2007) . Relationship between photosynthetic parameters and different proxies of phytoplankton biomass in the subtropical ocean. Biogeosciences, 4, 853-868, 2007  
17 Lami, R., Cottrell, M. T., Ras, J., Ulloa, O., Obernosterer, I., Claustre, H., Kirchman, D.L. and P. Lebaron (2006). High Abundances of Aerobic Anoxygenic Photosynthetic Bacteria in the South Pacific Ocean. Applied Environemental Microbiology, July 2007, 4198-4205 Lami_et_al_AEM_07.pdf
18 Morel, A., Gentili, B., Claustre, H., Babin, M., Bricaud, A., Ras, J., and F. Tieche (2007) Optical properties of the ""clearest"" natural waters, Limnology and Oceanography, 52, 217-229 Morel_et_al_LO_07.pdf
19 Morel, A., H. Claustre, D. Antoine, and B. Gentili (2007). Natural variability of bio-optical properties in Case 1 waters: attenuation and reflectance within the visible and near-UV spectral domains, as observed in South Pacific and Mediterranean waters. Biogeosciences, 4, 913-925.  
20 Morel, A., Huot, Y., Gentili, B., Werdell, P.J., Hooker, S.B. and B.A. Franz (2007). Examining the consistency of products derived from various ocean color sensors in open ocean (Case 1) waters in the perspective of a multi-sensor approach. Remote Sensing of Environment, 111, 69-88. Morel_et_al_RSE_07.pdf
21 Tedetti, M., Sempere, R., Vasilkov, A., Charriere, B., Nerini, D., Miller, W.L, Kawamura, K. and P. Raimbault (2007). High penetration of ultraviolet radiation in the South East Pacific waters. Geophysical Research Letters, VOL. 34, L12610, doi:10.1029/2007GL029823 Tedetti_et_al_GRL_07.pdf
22 Twardowski, M.S. H. Claustre, S. A. Freeman, D. Stramski, and Y. Huot (2007). Optical backscattering properties of the "clearest" natural waters. Biogeosciences, 4, 1041-1058.  
23 Voss, K.J., A. Morel, and D. Antoine (2007). Detailed validation of the bidirectional effect in various Case 1 waters for application to ocean color imagery. Biogeosciences, 4, 781-789.  
24 Beaufort, L., M. Couapel, N. Buchet, H. Claustre, and C. Goyet (2008). Calcite production by coccolithophores in the south east Pacific Ocean. Biogeosciences, 5, 1101-1117.  
25 Blain, S., S. Bonnet, and C. Guieu (2008). Dissolved iron distribution in the tropical and sub tropical South Eastern Pacific. Biogeosciences, 5, 269-280, 2008  
26 Bonnet, S., C. Guieu, F. Bruyant, O. Prášil, F. Van Wambeke, P. Raimbault, T. Moutin, C. Grob, M. Y. Gorbunov, J. P. Zehr, S. M. Masquelier, L. Garczarek, and H. Claustre (2008). Nutrient limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise). Biogeosciences, 5, 215-225, 2008  
27 Brown, C., Huot, Y., Werdell, P. J., Gentili, B., and Claustre, H. (2008): The origin and global distribution of second order variability in satellite ocean color, Remote Sensing of Environment,Remote Sensing of Environment, 112, 4186-4203, doi:10.1016/j.rse.2008.06.008 Brown_et_al_RSE_.08.pdf
28 Claustre, H., A. Sciandra, and D. Vaulot (2008). Introduction to the special section bio-optical and biogeochemical conditions in the South East Pacific in late 2004: the BIOSOPE program. Biogeosciences, 5, 679-691.  
29 Claustre, H., Y. Huot, I. Obernosterer, B. Gentili, D. Tailliez, and M. Lewis (2008). Gross community production and metabolic balance in the South Pacific Gyre, using a non intrusive bio-optical method. Biogeosciences, 5, 463-474, 2008  
30 Gomez, F. (2008) Erythropsidinium (Gymnodiniales, Dinophyceae) in the Pacific Ocean, a unique dinoflagellate with an ocelloid and a piston. European Journal of Protistology, 44, 291-298 Gomez_EJP_08.pdf
31 Gomez, F. (2008). Dicroerisma (Actiniscales, Dinophyceae) in the open Pacific Ocean, a gymnodinioid dinoflagellate with an endoskeleton Chinese Journal of Oceanology and Limnology, 26, 116-120 Gomez_CJOL_08.pdf
32 Gomez, F., Claustre, H. and S. Souissi, (2008). Rarely reported dinoflagellates of the genera Ceratium, Gloeodinium, Histioneis, Oxytoxum and Prorocentrum (Dinophyceae) from the open southeast Pacific Ocean. Revista de Biología Marina y Oceanografía 43,25-40. Gomez_et_al._RBMO_08.pdf
33 Guidi, L. G. Gorsky, H. Claustre, J. C. Miquel, M. Picheral, and L. Stemmann (2008). Distribution and fluxes of aggregates >100 micrometers in the upper kilometer of the South-Eastern Pacific. Biogeosciences, 5, 1361-1372.  
34 Huot, Y., A. Morel, M. S. Twardowski, D. Stramski, and R. A. Reynolds (2008). Particle optical backscattering along a chlorophyll gradient in the upper layer of the eastern South Pacific Ocean Biogeosciences, 5, 495-507.  
35 Le Gall, F. F. Rigaut-Jalabert, D. Marie, L. Garczarek, M. Viprey, A. Gobet, and D. Vaulot (2008). Picoplankton diversity in the South-East Pacific Ocean from cultures. Biogeosciences, 5, 203-214.  
36 Masquelier S., and D. Vaulot (2008). Distribution of micro-organisms along a transect in the South-East Pacific Ocean (BIOSOPE cruise) using epifluorescence microscopy Biogeosciences, 5, 311-321.  
37 Moutin, T., D. M. Karl, S. Duhamel, P. Rimmelin, P. Raimbault, B. A. S. Van Mooy, and H. Claustre (2008). Phosphate availability and the ultimate control of new nitrogen input by nitrogen fixation in the tropical Pacific Ocean. Biogeosciences, 5, 95-109.  
38 Obernosterer, I., P. Catala, R. Lami, J. Caparros, J. Ras, A. Bricaud, C. Dupuy, F. van Wambeke, and P. Lebaron (2008). Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean. Biogeosciences, 5, 693-705.  
39 Raimbault, P. and N. Garcia (2008). Evidence for efficient regenerated production and dinitrogen fixation in nitrogen-deficient waters of the South Pacific Ocean: impact on new and export production estimates. Biogeosciences, 5, 323-338.  
40 Raimbault, P., N. Garcia, and F. Cerutti (2008). Distribution of inorganic and organic nutrients in the South Pacific Ocean - evidence for long-term accumulation of organic matter in nitrogen-depleted waters. Biogeosciences, 5, 281-298.  
41 Ras, J., H. Claustre, and J. Uitz Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data (2008). Biogeosciences, 5, 353-369, 2008  
42 Sempere, R., M. Tedetti, C. Panagiotopoulos, B. Charriere, and F. Van Wambeke (2008). Distribution and bacterial availability of dissolved neutral sugars in the South East Pacific. Biogeosciences, 5, 1165-1173.  
43 Stemmann L, Robert K, Hosia A, Picheral M, Paterson H, Youngbluth MJ, Ibanez F, Guidi L, Gorsky G (2008) Global zoogeography of fragile macrozooplankton in the upper 100m inferred from the underwater video profiler Ices Journal of Marine Science 65:433-442 Stemmann_ICES_08.pdf
44 Stemmann, L., D. Eloire, A. Sciandra, G. A. Jackson, L. Guidi, M. Picheral, and G. Gorsky (2008). Volume distribution for particles between 3.5 to 2000 micrometers in the upper 200 m region of the South Pacific Gyre. Biogeosciences, 5, 299-310  
45 Stramski, D. R. A. Reynolds, M. Babin, S. Kaczmarek, M. R. Lewis, R. Rottgers, A. Sciandra, M. Stramska, M. S. Twardowski, B. A. Franz, and H. Claustre (2008). Relationships between the surface concentration of particulate organic carbon and optical properties in the eastern South Pacific and eastern Atlantic Oceans. Biogeosciences, 5, 171-201.  
46 Tolosa, I., J.-C. Miquel, B. Gasser, P. Raimbault, C. Goyet, and H. Claustre (2008). Distribution of lipid biomarkers and carbon isotope fractionation in contrasting trophic environments of the South East Pacific. Biogeosciences, 5, 949-968.  
47 Uitz, J., Huot, Y., Bruyant, F., Babin, M. and H. Claustre (2008), Relating phytoplankton photophysiological properties to community structure on large scale. Limnology and Oceanography, 53(2), 614-630 Uitz_et_al_LO_08.pdf
48 Van Mooy, B. A. S. , T. Moutin, S. Duhamel, P. Rimmelin, and F. Van Wambeke (2008). Phospholipid synthesis rates in the eastern subtropical South Pacific Ocean. Biogeosciences, 5, 133-139, 2008  
49 Van Wambeke, F., I. Obernosterer, T. Moutin, S. Duhamel, O. Ulloa, and H. Claustre (2008). Heterotrophic bacterial production in the eastern South Pacific: longitudinal trends and coupling with primary production. Biogeosciences, 5, 157-169.  
50 Van Wambeke, F., S. Bonnet, T. Moutin, P. Raimbault, G. Alarcon, and C. Guieu (2008). Factors limiting heterotrophic bacterial production in the southern Pacific Ocean Biogeosciences, 5, 833-845.  
51 Wagener, T., Guieu, C., Losno, R., Bonnet, S. and N. Mahowald (2008) Revisiting Atmospheric dust export to the South Hemisphere Ocean : biogeochemical implications, Global Biogeochemical Cycles, vol. 22, GB2006, doi:10.1029/2007GB002984 Wagener_et_al_2008_GBC.pdf
52 Zwirglmaier,K., L. Jardillier, M. Ostrowski, S.Mazard, L.Garczarek, D. Vaulot, F. Not, R. Massana, O. Ulloa and Dave J. Scanlan (2008). Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environmental Microbiology, 10(1), 147-161 Zwirglmaier_et_al._EM_08.pdf
53 Duhamel, S., C and P incorporation rates of microbial assemblages in contrasting environments in the Southeast Pacific, Marine Ecology Progress Series, 375, 53-64, 2009 doi: 10.3354/meps07765 Duhamel_and_Moutin_MEPS_09.pdf
54 Gomez, F. (2009) Torodinium and Pavillardia (Gymnodiniales, Dinophyceae): two unarmoured dinoflagellates with a body extension, collected from the open Pacific Ocean. Protistology,6, 131-135  
55 Goyet, C., Ito Goncalves R., and F. Touratier (2009). Anthropogenic carbon in the Eastern Tropical Pacific Ocean. Biogeosciences, 6, 149-156  
56 Guidi, L., Steemmann, L., Jackson, G.A., Ibanez, F., Claustre, H., Legendre, L., Picheral, M., Gorsky, G. (2009). Primary producer community effect on production and export of large aggregates : a global analysis. Limnology and Oceanography, 54(6) 1951-1963.  
57 Lepere, C., D. Vaulot, and D. J. Scanlan (2009), Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth, Environ. Microbiol., 11(12), 3105-3117.  
58 Morel, A. (2008). Are the empirical laws describing the bio-optical properties of case 1 waters consistent and internally compatible? Journal of Geophysical Research, Journal of Geophysical Research, 114, C01016, doi:10.1029/2008JC004803. Morel_JGR_09.pdf
59 Morel, A. and B. Gentili (2009). A simple band ratio technique to quantify the colored dissolved and detrital organic material from ocean color remotely sensed data. Remote Sensing of Environement, 113, 998-1011, doi:10.1016/j.rse.2009.01.008  
60 Shi, X. L., D. Marie, L. Jardillier, D. J. Scanlan, and D. Vaulot (2009), Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean, Plos One, 4(10).  
61 Van Mooy B. A. S., Fredricks H. F., Pedler B. E., Dyhrman S. T., Karl D. M., Lomas M. W., Mincer T., Moore L. R., Moutin T., Rappe M. S., and Webb E. A. (2009) Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity. Nature, 458, 69-72.  
62 Bricaud, A., Babin, M., Claustre, H., Ras, J. and F. Tieche (2010). Light absorption properties and absorption budget of South East Pacific waters. Journal of Geophysical Research, VOL. 115, C08009, doi:10.1029/2009JC005517  
63 Charpentier, J., L. Farias, and O. Pizarro (2010), Nitrous oxide fluxes in the central and eastern South Pacific, Global Biogeochemical Cycles, 24.  
64 Duforet-Gaurier, L., H. Loisel, D. Dessailly, K. Nordkvist, and S. Alvain (2010), Estimates of particulate organic carbon over the euphotic depth from in situ measurements. Application to satellite data over the global ocean, Deep-Sea Research Part I-Oceanographic Research Papers, 57(3), 351-367.  
65 Kostadinov, T. S., D. A. Siegel, and S. Maritorena (2010), Global variability of phytoplankton functional types from space: assessment via the particle size distribution, Biogeosciences, 7(10), 3239-3257.  
66 Partensky, F., and L. Garczarek (2010), Prochlorococcus: Advantages and Limits of Minimalism, in Annual Review of Marine Science, edited, pp. 305-331.  
67 Tedetti, M., Charriere, B., Bricaud, A., Para, J., Rimbault, P. and R. Sempere (2010). Distribution of normalized water-leaving radiances at UV and visible wavebands in relation with chlorophyll a and colored detrital matter content in the South East Pacific. Journal of Geophysical Research, 115, C02010, doi:10.1029/2009JC005289  
68 Van Mooy, B. A. S., and H. F. Fredricks (2010), Bacterial and eukaryotic intact polar lipids in the eastern subtropical South Pacific: Water-column distribution, planktonic sources, and fatty acid composition, Geochimica et Cosmochimica Acta, 74(22), 6499-6516.  
69 Beaufort, L., et al. (2011), Sensitivity of coccolithophores to carbonate chemistry and ocean acidification, Nature, 476(7358), 80-83.  
70 Duhamel, S., K. M. Bjoerkman, F. Van Wambeke, T. Moutin, and D. M. Karl (2011), Characterization of alkaline phosphatase activity in the North and South Pacific Subtropical Gyres: Implications for phosphorus cycling, Limnology and Oceanography, 56(4), 1244-1254.  
71 Jackson, T., H. A. Bouman, S. Sathyendranath, and E. Devred (2011), Regional-scale changes in diatom distribution in the Humboldt upwelling system as revealed by remote sensing: implications for fisheries, Ices Journal of Marine Science, 68(4), 729-736.  
72 Jouenne, F., W. Eikrem, F. Le Gall, D. Marie, G. Johnsen, and D. Vaulot (2011), Prasinoderma singularis sp nov (Prasinophyceae, Chlorophyta), a Solitary Coccoid Prasinophyte from the South-East Pacific Ocean, Protist, 162(1), 70-84  
73 Lepere, C., M. Demura, M. Kawachi, S. Romac, I. Probert, and D. Vaulot (2011), Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations, Fems Microbiology Ecology, 76(3), 513-523.  
74 Mignot, A., Claustre, H., F. D'Ortenzio, F., Xing, X, Poteau, A. and J. Ras (2011). From the shape of the vertical profile of in vivo fluorescence to Chlorophyll-a concentration. Biogeosciences, 8, 2391–2406, doi:10.5194/bg-8-2391-2011  
75 Shi XL, Lepere C, Scanlan DJ, Vaulot D (2011) Plastid 16S rRNA Gene Diversity among Eukaryotic Picophytoplankton Sorted by Flow Cytometry from the South Pacific Ocean. PLoS ONE 6(4): e18979. doi:10.1371/journal.pone.0018979  
76 West, N. J., P. Lebaron, P. G. Strutton, and M. T. Suzuki (2011), A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the South and Equatorial Pacific Ocean, Isme Journal, 5(6), 933-944.  
77 Xing, X., Morel, A., Claustre, H., Antoine, D., D'Ortenzio, F., Poteau, A., Mignot, A. (2011). Combined processing and mutual interpretation of radiometry and fluorimetry from autonomous profiling Bio-Argo Floats. The retrieval of Chlorophyll a, Journal of Geophysical Research, 116, C06020, doi:10.1029/2010JC006899.  
78 Babin, M., D. Stramski, R. A. Reynolds, V. M. Wright, and E. Leymarie (2012). Determination of the volume scattering function of natural water samples. Applied Optics, 51, 17, 3853-3873  
79 Gleason, A. C. R., K. J. Voss, H. R. Gordon, M. Twardowski, J. Sullivan, C. Trees, A. Weidemann, J.-F. Berthon, D. Clark, and Z.-P. Lee (2012), Detailed validation of the bidirectional effect in various Case I and Case II waters, Optics Express, 20(7), 7630-7645.  
80 Groundwater, H., M. S. Twardowski, H. M. Dierssen, A. Sciandra, and S. A. Freeman (2012), Determining Size Distributions and Composition of Particles Suspended in Water: A New SEM-EDS Protocol with Validation and Comparison to Other Methods, Journal of Atmospheric and Oceanic Technology, 29(3), 433-449.  
81 Thompson, A. W., Foster, R. A., Krupke, A., Carter, B. J., Musat, N., Vaulot, D., Kuypers, M. M. M. & Zehr, J. P. (2012) Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337:1546-1550. doi: 10.1126/science.1222700 thompson_science_2012.pdf
82 Vaulot D, Lepere C, Toulza E, De la Iglesia R, Poulain J, et al. (2012) Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling. PLoS ONE 7(6): e39648. doi:10.1371/journal.pone.0039648  
83 Matallana-Surget S., Villette C., Intertaglia L., Joux F., Bourrain M., Lebaron P. (2012) Response to UVB radiation and oxidative stress of marine bacteria isolated from South Pacific Ocean and Mediterranean Sea. Journal of Photochemistry and Photobiology B-Biology 117: 254-261.  
84 Xing, X., Morel, A., Claustre, H., D'Ortenzio, F., and A. Poteau (2012). Combined processing and mutual interpretation of radiometry and fluorometry from autonomous profiling Bio-Argo floats: 2. Colored dissolved organic matter absorption retrieval. Journal of Geophysical Research, Vol. 117, No. C4, C04022,  
85 Kirkham, A. Cecile Lepere, C. Ludwig E Jardillier, Jardillier, L.E., Not, F., Bouman, H. , Mead, A. and D. J Scanlan, A global perspective on marine photosynthetic picoeukaryote community structure. The ISME Journal DOI:10.1038/ismej.2012.166  
86 Lee, Z., Hu, C, Shang, S., Du, K., Lewis, M., Arnone, R., Brewin, R. (2013) Penetration of UV-Visible solar radiation in the global oceans: Insights from ocean color remote sensing Journal of Geophysical Research: Oceans DOI 10.1002/jgrc.20308  
87 Martiny, A.C., Pham, C.T.A., Primeau, F.W., Vrugt, J.A. Moore, J. K., Levin, S.A., and M. W. Lomas (2013) Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter. Nature Geoscience doi: 10.1038/NGEO1757  
88 Organelli, E. , A. Bricaud, D. Antoine and J. Uitz (2013). Multivariate approach for the retrieval of phytoplankton size structure from measured light absorption spectra in the Mediterranean Sea (BOUSSOLE site). Applied Optics, 52, 2257-2273.  
89 Peloquin, J. et al. (2013). The MAREDAT global database of high performance liquid chromatography marine pigment measurements. Earth Syst. Sci. Data, 5, 109-123, doi:10.5194/essd-5-109-2013