Bachy, C., Morira, D., Dolan, J.R., Lopez-Garcia, P. 2013. Seasonal dynamics of free-living tintinnid ciliate communities revealezs by environmental sequences from the North-West Mediterranean Sea. FEMS Microbiology Ecology, in press

Bachy, C., Dolan, J.R., López-García, P., Deschamps, P., Moreira, D. 2013. Accuracy of protist diversity assessments: morphology compared to cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. ISME Journal:, 7:244-255.

Biré, R., Trotereau, S., Lemée, R., Delpont, C., Chabot, B., Aumond, Y., Krys, S. 2013. Occurrence of palytoxines in marine organisms from different trophic levels harvested on the French Mediterrean coast in 2009. Harmful Algae, in press.

Chua C. M., Leggat W., Moya A. & Baird A. H., 2013. Temperature affects the early life history stages of corals more than near future ocean acidification. Marine Ecology Progress Series 475:85-92.

Cohu, S., Mangialajo, L., Thibaut, T., Blanfuné, A., Marro, S., Lemée, R. 2013. Proliferation of the toxic dinoflagellates Ostreopsis cf. ovata in relation with depth, biotic substrate and environmental factors in NW Mediterranean Sea. Harmful Algae, 24:32-44.

Dolan, J.R. 2013. The Paradox of the Publication. Limnology and Oceanography Bulletin, 22:37-40.

Dolan, J.R. 2013. Doing a Protist Book. Protist, 164:154-159.

Dolan, J.R., Landry, M.R., Ritchie, M.E. 2013. The species-rich assemblages of tintinnids (marine planktonic protists) are structured by mouth size. ISME Journal, in press.

Dolan, J.R., Yang, E.J., Kim, T.W., Kang, S.-H. 2013. Microzooplankton in a Warming Arctic: A comparison of tintinnids and radiolarians from summer 2011 and 2012 in the Chukchi Sea. Acta Protozoologica 52, in press.

Dolan, J.R., Yang, E.J., Lee, S. H., Kim, S.Y. 2013. Tintinnid ciliates of the Amundsen Sea (Antarctica) Plankton communities. Polar Research 32: 19784.

Dorey, N., Melzner, F., Martin, S., Oberhänsli, F., Teyssié, J._l., Bustamente, P., Gattuso J.-P., Lacoue-Labarthe, T. 2013. Ocean acidification and temperature rise: effects on calcification during early development of the cuttlefish Sepia officinalis. Marine Biology, in press.

Gattuso J.-P., Mach K. J., Morgan G. M. 2013. Ocean acidification and its impacts: an expert survey. Climatic Change, in press.

Gazeau, F., L.M. Parker, S. Comeau, J.-P. Gattuso, W.A. O’Connor, S. Martin, H.-O. Pörtner, and P.M. Ross. 2013. Impacts of ocean acidification on marine shelled molluscs. Marine Biology 160: 2207-2245.

Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C., Burgaud, G., de Vargas, C., Decelle, J., del Campo, J., Dolan, J.R., Dunthorn, M., Edvardsen, B., Holzman, M., Kooistra, W. H. C. F., Lara, E., Le Bescot, N., Logares, R., Mahé, F., Massana, R., Montresor, M., Morad, R., Not, F., Pawlowski, J., Probert, I., Sauvadet, A.-L., Siano, R., Stoeck, T., Vaulot, D., Zimmermann, P., Christen, R. 2013. The Protist Ribosomal Reference database (PR2 : a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Research, doi: 10.1093/nar/gks1160

Kim, S.Y., Choi, J.K., Dolan, J.R., Shin, H.C., Lee, S., Yang, E.J. 2013. Morphological and Ribosomal DNA-based Characterization of Six Antarctic Ciliate 5 morphopecies from the Amundsen Sea with Phylogenetic Analyses. Journal of Eukaryotic Microbiology, 60: 497-513.

Kroeker K., Kordas R. C., Ryan, Hendriks I., Ramajo L., Singh G., Duarte C., Gattuso J.-P. 2013. Impacts of ocean acidification on marine organisms: quantifying sensitivities and interactions with warming. Global Change Biology, in press.

Maier, C., Schubert, A., Sanchez, M.M.B., Weinbauer, M.G., Watremez, P., Gattuso J.-P., 2013. End of the century pCO2 levels do not impact calcification in Mediterranean cold-water corals. PLoS ONE, in press.

Martin S., Cohu S., Vignot C., Zimmerman G., Gattuso J.-P. 2012. One-year experiment on the physiological response of the Mediterranean crustose coralline alga, Lithophyllum cabiochae, to elevated pCO2 and temperature. Ecology and Evolution, in press.

Motegi, C., Tanaka, T., Piontek, J., Brussaard, C.P.D., Gattuso, J.-P., Weinbauer M.G .2013. Effect of CO2 enrichment on bacterial production and respiration and on bacterial carbon metabolism in Arctic waters. Biogeosciences, 10: 3285-3296.

Pretet C., Samankassou E., Felis T., Reynaud S., Böhm F., Eisenhauer A., Ferrier-Pagès C., Gattuso J.-P., Camoin G., 2013. Constraining calcium isotope fractionation (δ 44/40Ca) in modern and fossil scleractinian coral skeleton. Chemical Geology 340:49-58.

Rossi, F., B. Gribsholt, F. Gazeau, V. Di Santo, and J.J. Middelburg. 2013. Complex Effects of Ecosystem Engineer Loss on Benthic Ecosystem Response to Detrital Macroalgae. PLoS ONE 8: e66650.

Tanaka, T., Alliouane S., Bellerby, R. G. B., Czerny, J., de Kluijver, A., Riebesell, U., Schulz, K. G., Silyakova, A., Gattuso, J.-P., 2013. Effect of increased pCO2 on the planktonic metabolic balance during a mesocosm experiment in an Arctic fjord. Biogeosciences, 10: 315-325.

van de Locht R., Verch A., Saunders M., Dissard D., Rixen T., Moya A. & Kroger R., 2013. Microstructural evolution and nanoscale crystallography in scleractinian coral spherulites. Journal of Structural Biology 183:57-65.

Zhang, R., Weinbauer, M., Tam, Y. P.-Y. Qian. 2013. Response of bacterioplankton to a glucose gradient in the absence of lysis and grazing. FEMS Microbiology Ecology, 84: in press.

Zhang, R., Xia, X., Lau, S.C.K., Motegi, C., Weinbauer, M.G., Jiao, N. 2013. Response of bacterioplankton community structure to an artificial gradient of pCO2 in the Arctic Ocean. Biogeosciences, 10: in press.


Amzil, Z., Sibat, M., Chomerat, N., Grossel, H., Mirrales, F., Lemée, R., Nezan, E., Sechet, V. 2012. Ovatoxin-a and Palytoxin accumulation in seafood in relation with Ostreopsis cf. ovata blooms on the French Mediterranean coast. Marine Drugs 10:477-496.

Bachy, C., Gómez, F., López-García, P., Dolan, J.R., Moreira, D. 2012. Molecular phylogeny of tintinnid ciliates (Tintinnida, Ciliophora). Protist, 163:873-887.

Blanfuné, A., Cohu, S., Mangialajo, L., Lemée, R., Thibaut, T. 2012. Preliminary assessents of the impact of Ostreopsis cf. ovata (Dinophyceae) development on macroinvertebrates in the North Western Mediterranean Sea. Cryptogamie Algologie, 33: 129-136.

Cohu, S., Lemée, R. 2012. Vertical distribution of the toxic epibenthic dinoflagellates Ostreopsis cf. ovata, Prorocentrum lima and Coolia monotis in the NW Mediterranean Sea. Cahiers de Biologie Marine, 53:373-380.

Comeau S., Alliouane S., Gattuso J.-P. 2012. Effects of ocean acidification on overwintering juvenile Arctic pteropods Limacina helicina. Marine Ecology Progress Series, 456:279-284.

Comeau, S., Gattuso J.-P., Nisumaa, A.-M., Orr, J. 2012. Impact of aragonite saturation state changes on migratory pteropods. Proceedings of the Royal Society (B) 279: 732-738. doi: 10.1098/rspb.2011.0910

Dolan, J.R 2012. Tintinntinid Ciliates: an Introduction and Overview in Biology and Ecology of Tintinnid Ciliates: Models for Marine Plankton, Dolan, J.R., Agatha, S., Coats, D.W., Montagnes, D.J.S., Stocker, D.K. (eds). Wiley-Blackwell, Oxford, pp 2-16.

Dolan, J.R., Pierce, R.W. 2012. Diversity and Distributions of Tintinnid Ciliates. in Biology and Ecology of Tintinnid Ciliates: Models for Marine Plankton, Dolan, J.R., Agatha, S., Coats, D.W., Montagnes, D.J.S., Stocker, D.K. (eds). Wiley-Blackwell, Oxford, pp 214-243.

Dolan, J.R., Pierce, R.W., Yang, E.J., Kim, S.Y. 2012. Southern Ocean biogeography of tintinnid ciliates of the marine plankton. Journal of Eukaryotic Microbiology, 59: 511-519.

Gattuso J.-P., Mach K. J. & Morgan G. M. 2012. Ocean acidification and its impacts: an expert survey. Climatic Change, in press.

Gomez, F., Lopez-Garcia, P., Dolan, J.R,, Moreira, D. Molecular phylogeny of the marine dinoflagellate genus Heterodinium (Dinophyceae). European Journal of Phycology, 47:95-104.

Guidi-Guilvard, L., Gasparini, S., Lemée, R. 2012. The negative impact of Ostreopsis cf. ovata on phytal meiofauna from the coastal NW Mediterranean. Cryptogamie Algologie, 33: 121-128.

Lacoue-Labarthe, T., Martin, S., Oberhansii, F., Teyssié, J.-L., Jeffree, R., Gattuso J.-P., Bustamente, P. 2012. Temperature and pCO2 effect on the bioaccumulation of radionuclides and trace elements in the eggs of the common cuttlefish, Sepia officinalis. Journal of Experimental Marine Biology and Ecology, 413:45-59.

Lemée R., Mangialajo L., Cohu S., Amzil Z., Blanfune A., Chomerat N., Ganzin N., Gasparini S., Grossel H., Guidi-Guilvard L., Hoareau L., le Duff F., Marro S., Simon N., Nezan E., Pedrotti M.-L., Sechet V., Soliveres O., Thibaut T. 2012 Interactions between scientists, managers and policy makers in the framework of the French MediOS project on Ostreopsis (2008-2010). Cryptogamie Algologie, 33: 137-142.

Maier C., Watremez P., Taviani M., Weinbauer M.G, Gattuso J.-P. 2012. Calcification rates and the effect of ocean acidification on Mediterranean cold-water corals. Proceedings of the Royal Society of London. Series B: Biological Sciences 279: 1716-1723.

Mari, X. Rochell-Newall, E., Torréton, J.-P., Pringault, O., Bettarel, I., Motegi, C., Weinbauer, M.G. 2012. Production of individual marine organic aggregates using paramagnetic microspheres: A new tool for examining microbial associations with aggregates. Limnology and Oceanography Methods, in press..

Moya A., Huisman J., Ball E.E., Hayward D.C., Grasso L.C., Chua C.M., Woo H.N., Gattuso J.-P., Foret S., Miller D.J. 2012. Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the Initiation of calcification. Molecular Ecology 21: 2440-2454.

Müller N.N., Beaufort L., Bernard O., Pedrotti M.L., Talec A., Sciandra A. 2012. Influence of CO2 and nitrogen limitation on the coccolith volume of Emiliania huxleyi (Haptophyta). Biogeosciences 9: 4155-4167.

Pedrotti, M. L., Fiorini S., Kerros, M.-E., Middelburg J., Gattuso J.-P. 2012. Production of transparent exopolymeric particles by haploid and diploid life stages of three coccolithophores grown under different CO2 concentration. Journal of Plankton Research 34:388-398.

Séchet V., Sibat M., Chomerat N., Nezan E., Grossel H., Lehebel-Peron J.B., Jauffrais T., Ganzin N., Marco-Miralles F., Lemée R., Amzil Z. 2012. Ostreopsis cf. ovata in the French Mediterranean coast: molecular characterization and toxin profile. Cryptogamie Algologie, 33: 89-98.

Tanaka, T. 2012. “Marine ecosystem ” In Ocean Science. (Edited by The Oceanographic Society of Japan) Publisher: Chijin-shokan ISBN978-4-8052-0834-2 (in Japanese), in press.

Tunin-Ley, A., Vaugelas, J. de, Garcia, D., Marro, S., Lemée, R. 2012. A new collaborative web site to improve the accuracy of dinoflagellate identification: focus on the morphologically-variable genus Neoceratium Schrank. Cryptogamie Algologie, 33: 399-404.

Turley, C.T.,Gattuso J.-P. 2012. Future biological and ecosystem impacts of ocean acidification and their socioeconomic-policy implications. Current Opinion in Environmental Sustainabilty, 4: 276-286.

Weinbauer, M.G., Cattaneo, R., Malits, A., Motegi, C., Gasol, J.M., Herndl, G.J., Mari, X., Migon, C. & Rassoulzadegan, F. Black Carbon and Microorganisms in Aquatic Systems. In: Advances in Environmental Research Volume 25, Daniels, E.D. (ed.), Nova Publishers , N.Y., in press.

Weinbauer, M.G., Ogier, J., Maier, C. 2012. Prokaryotic and viral abundances in the coelenteron and mucus of the cold-water coral Lophelia pertusa and in bottom water of the reef environment. Aquatic Biology, 16:209-216.

Winter, C., Kerros, M.-E., Weinbauer, M.G. 2012. Effects of sodium azide on the abundance of prokaryotes and viruses in marine samples. PLoS ONE, 7(5): e37597. doi:10.1371/journal.pone.0037597


Anthony, K.R.N., Kleypas, J.A., Gattuso J.-P. 2011. Coral reefs modify their seawater carbon chemistry -implications for impacts of ocean acidification. Global Change Biology, 17:3655-3666.

Bertrand J.-C., Bonin P., Caumette P., Gattuso J.-P., Grégori G., Guyoneaud R., Le Roux X., Matheron R. & Poly F., 2011. Les cycles biogéochimiques. In: Bertrand J.-C., Caumette P., Lebaron P., Matheron R. & Normand P. (Eds.), Écologie microbienne : microbiologie des milieux naturels et anthropisés, Pau, France: Presses Universitaires de Pau, pp 545-658.

Chen, X., Liu, H., Weinbauer, M., Chen, B., Jiao, N. 2011. Viral dynamics in the surface water of the Western South China Sea in summer 2007. Aquatic Microbial Ecology, 63:145-160.

Christaki, U., Van Wambeke,F., Lefevre,D. Lagaria, A., Prieur, L., Pujo-Pay, M., Grattepanche, J.-D., Colombet, J., Psarra, S., Dolan, J.R, Simé-Ngando, T., Conan, P., Weinbauer, M.G., Moutin, T. 2011. The impact of anticyclonic mesoscale structures on microbial food webs in the Mediterranean Sea. Biogeosciences 8:1839-1852.

Cohu, S., Thibaut, T., Mangialajo, L., Labat, J.P., Passafiume, O., Blanfuné, A., Simon, N., Cottalorda, J.M., Lemée, R. (2011). Occurence of the toxic dinoflagellate Ostreopsis cf. ovata in relation with environmental factors in Monaco (NW Mediterrean). Marine Pollution Bulletin 62: 2681-2691.

Dolan, J.R. 2011. The legacy of the last cruise of the Carnegie: a lesson in the value of dusty old taxonomic monographs. Journal of Plankton Research, 33:1317-1324.

Dolan, J.R, Stoeck, T. 2011. Repeated sampling reveals differential variability in measures of species richness and community composition in planktonic protists. Environmental Microbiology Reports, 3:661-666.

Fiorini, S., Middelburg, J.J.,Gattuso J.-P. 2011. Effects of elevated CO2 partial pressure and temperature on the coccolithophore Syracosphaera pulchra. Aquatic Microbial Ecology, 64:221-232.

Fiorini S., Middelburg J., Gattuso J.-P. 2011. Testing the effects of elevated pCO2 on coccolithophores (Prymnesiophyceae): comparison between haploid and diploid life stages. Journal of Phycology 47:1281-1291.

Gattuso J.-P., Hansson, L. 2011. Ocean acidification: background and history. in 'Ocean Acidification'. Gattuso, J.-P. and L. Hansson (eds.). Oxford University Press, pp. 1-20.

Gattuso J.-P.,Bijma, J., Gehlen, M., Riebesell, U., Turley, C. 2011. Ocean acidification: knowns, unknowns, and perspectives. in 'Ocean Acidification'. Gattuso, J.-P. and L. Hansson (eds.). Oxford University Press, pp. 291-312.

Gazeau, F., Gattuso J.-P., Greaves, M., Elderfield, H., Peene, J., Heip, C.H.R., Middelburg, J.J. 2011. Effect of carbonate chemistry alteration on the early embryonic development of the pacific oyster (Crassostrea gigas). PLoS ONE 6: e23010. doi:10.1371/journal.pone.0023010

Goldsmith, D.B., Crosti, G., Dwivedi, B., McDaniel, L.D., Varsani, A., Suttle, C.A., Weinbauer, M.G., Sandas, R.a., Breitbart, M. 2011. Development of a phoH as a novel signature gene for assessing marine phage diversity. Applied and Environmental Microbiology, 77: 7730-7739.

Jiao, N., Herndl, G.J., Hansell, D.A., Benner, R., Kattner, G., Wilhelm, S.W., Kirchman, D.L., Weinbauer, M.G., Luo, T., Chen, F., Azam, F. 2011. The microbial carbon pump and the oceanic recalcitrant dissolved organic matter pool. Nature Reviews Microbiology, 9: 555. (Published online: 31 May 2011 | doi:10.1038/nrmicro2386-c5)

Kleypas J. A., Anthony K. R. N., Gattuso J.-P. 2011. Coral reefs modify their seawater carbon chemistry- Case study from a barrier reef (Moorea, French Polynesia). Global Change Biology, 17:3667-3678.

Lacoue-Labarthe, T., Réveillac, Oberhänsii, Teyssié, J.L., Jeffree, R., Gattuso J.-P. 2011. Effects of ocean acidification on trace element accumulation in the early-life stages of squid Loligo vulgaris. Aquatic Toxicology 105:166-176.

Lagaria, A., Psarra, S., Lefèvre, D., Van Wambeke, F., Courties, C., Pujo-Pay, M., Oriol, L., Tanaka, T., Christaki, U. 2011. The effects of nutrient additions on particulate and dissolved primary production in surface waters of three Mediterranean eddies. Biogeosciences 8:2595-2607.

Lasternas, S., Tunin-Ley, A., Ibanez, F., Andersen, V., Pizay, M.-D., Lemée, R. 2011. Dynamics of microphytoplankton abundance and diversity in NW Mediterranean Sea during late summer condition (DYNAPROC 2 cruise; September-October 2004). Biogeosciences, 8: 743-761.

Maier C., De kluijver A., Agis M., Brussaard CPD, van Duyl FC, Weinbauer M.G. 2011. Dynamics of nutrients, total organic carbon, prokaryotes and viruses in onboard incubations of cold-water corals. Biogeosciences 8: 2609-2620.

Mangialajo, L., Ganzin, N., Accoroni, S., Asnagh,i V., Blanfuné, A., Cabrini, M., Cattaneo-Vietti, R., Chavanon, F., Chiantore, M., Cohu, S., Costa, E., Fornasaro, D., Grossel, H., Marco-Mirailles, F., Maso, M., Rene, A., Rossi, A.M., Sala, M.M., Thibaut, T., Totti, C., Vila, M., Lemée R. 2011.. Trends in Ostreopsis proliferation along the Northern Mediterranean coasts. Toxicon, 57:408-420.

Martin, S., Richier, S., Pedrotti, M.-L., Dupont, S., Castejon, C., Gerakis, Y., Kerros, M.-E., Oberhänsli, F., Teyssié, J.-L., Jeffree, R., Gattuso J.-P. 2011. Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification. Journal of Experimental Biology, 214:1357-1368.

Migon, C., Motegi, C., Mari, X., Dufour, A., Weinbauer, M. 2011. A preliminary study on metal and nutrient concentrations in running water systems in southern New Caledonia. Bulletin of Environmental Contamination and Toxicology, 87: 361-365.

Popendorf, K. J., Tanaka, T., Pujo-Pay, M., Lagaria, A., Courties, C., Conan, P., Oriol, L., Sofen, L. E., Moutin, T., Van Mooy, B. A. S. 2011. Gradients in intact polar diacylglycerolipids across the Mediterranean Sea are related to phosphate availability. Biogeosciences, 8: 3733-3745

Richier, S., Fiorini, S., Kerros, M.-E., von Dassow, P., Gattuso, J.-P. 2011. Response of the calcifying coccolithophore Emiliania huxleyi to low pH/high pCO2: from physiology to molecular level. Marine Biology, 158:551-560.

Rodolfo-Metalpa, R., Houlbrèque, F., Tambutté, E., Boisson, F., Baggini, C., Patti, F.P., Jeffree, R., Fine, M., Foggo, A., Gattuso J.-P., Hall-Spencer, J.M. 2011. Coral and mollusc resistance to ocean acidification adversely affected by warming. Nature Climate Change, 1:308-312.

Romero, E., Peters, F., Marrasé, C., Guadol, O., Gasol, J.M., Weinbauer, M.G. 2011. Coastal Mediterranean plankton stimulation dynamics through a dust storm event: an experimental simulation. Estuarine Coastal and Shelf Research, 9:27-39.

Smith, S.V, Gattuso J.-P. 2011. Balancing the ocean calcium carbonate cycle: consequences of variable water column Y. Aquatic Geochemistry, 17: 327-337..

Tanaka, T. Thingstad, T.F., Christaki, U., Colombet, J., Cornet-Barthaux, V., Courties, C. Grattepanche, J.-D., Lagaria, A., Nedoma, J., Oriol, L. Psarra, Pujo-Pay, S.M., Van Wambeke, F. 2011. Lack of P-limitation of phytoplankton and heterotrophic prokaryotes in surface waters of thrtee anticyclonic eddies in the stratified Mediterranean Sea. Biogeosciences 8:525-538.

The MerMex Group 2011. Marine ecosystems responses to climatic and anthropogenic forcings in the Mediterranean. Progress in Oceanography, 91: 97-166.

Trabelsi, A., Rassoulzadegan, F. 2011. Effect of bacterial community dynamics on DOC seasonal changes in the north-western Mediterranean Sea. Journal of Plankton Research, 33: 1249-1262.

Trabelsi, A., Rassoulzadegan, F. 2011. Inorganic nutrient control of dissolved organic carbon (DOC) dynamics in NW Mediterranean waters: An experimental approach. Marine Biology Research, 7: 667-676.

Tremblay, P., Weinbauer, M.G., Rottier, C., Guérardel, Y., Nozais, C., Ferrier-Pagès, C. 2011. Mucus composition and bacterial communities associated with the tissue and skeleton of three scleractinian corals maintained culture conditions. Journal of the Marine Biological Association, U.K., 91:649-657.

Trotter, J., Montagna, P., McCulloch, M., Silenzi, S., Reynaud, S., Mortimer, G., Martin, S., Ferrier-Pages, C., Gattuso J.-P., Rodolfo-Metalpa, R. 2011. Quantifying the pH ‘vital effect’ in the temperate zooxanthellate coral Cladocora caespitosa: Validation of the boron seawater pH proxy. Earth and Planetary Science Letters, 303:163-173.

Turley C., Gattuso J.-P., Hoegh-Guldberg O., 2011. Ocean acidification: examples of potential impacts. In: Richardson K., Steffen W. & Liverman D. (Eds.), Climate change: global risks, challenges and decisions, pp. 37-39. Cambridge: Cambridge University Press.

Weinbauer, M.G., Cheng, F., Wilhelm, S.W. 2011. Virus-mediated redistribution and paritioning of carbon in the global oceans. in 'Microbial Carbon Pump in the Ocean', Jiap, N., Azam, F., Sanders, s. (eds). Science/AAAS, pp. 54-56.

Weinbauer, M.G., Mari,X., Gattuso, J.-P. 2011. Effect of ocean acidification on the diversity and activity of heterotrophic marine microorganisms. in 'Ocean Acidification'. Gattuso, J.-P. and L. Hansson (eds.). Oxford University Press, pp. 83-98.

Weinbauer, M.G., Bonilla-Findji, O., Chan, A. M., Dolan, J.R, Short, S. M., Šimek, K., Wilhelm S. W., Suttle, C. A. 2011. Synechococcus growth in the ocean is supported by the lysis of heterotrophic bacteria. Journal of Plankton Research, 33:1465-1476.


Bonilla-Findji, O., Gattuso, J.-P., Pizay, M.-D., Weinbauer, M.G. 2010. Autotrophic and heterotrophic metabolism in an oligotrophic coastal marine ecosystem: seasonal dynamics and episodic events. Biogeosciences, 7:3491-3503.

Brussaard, C.P.D., Payet, J.P., Winter, C., Weinbauer, M.G. 2010. Quantification of aquatic viruses by flow cytometry. In: Suttle C, Wilhelm SW, Weinbauer MG (eds). Manual of Aquatic Viral Ecology, Limnology and Oceanography Methods.

Burd, A. B., D. A. Hansell, D. K. Steinberg, T. R. Anderson, J. Aristegui, F. Baltar, S. R. Beaupre, K. O. Buesseler, F. DeHairs, G. A. Jackson, D. C. Kadko, R. Koppelmann, R. S. Lampitt, T. Nagata, T. Reinthaler, C. Robinson, B. H. Robison, C. Tamburini, T. Tanaka (2010) Assessing the apparent imbalance between geochemical and biochemical indicators of meso- and bathypelagic biological activity: What the @$#! is wrong with present calculations of carbon budgets? Deep-Sea Research Part II, 57: 1557-1571.

Dolan, J.R 2010. Morphology and ecology in tintinnid ciliates of the marine plankton: correlates of lorica dimensions. Acta Protozoologica, 49:235-244.

Cattaneo, R.,  Rouvière, C.,  Rassoulzadegan, F., Weinbauer, M.G. 2010. Association of marine viral and bacterial communities with reference black carbon particles under experimental conditions: An analysis with scanning electron, epifluorescence and confocal laser scanning microscopy. FEMS Microbiology Ecology, 74:392-396.

Comeau S., Gorsky G., Alliouane S., Gattuso J.-P., 2010. Larvae of the pteropod Cavolinia inflexa exposed to aragonite undersaturation are viable but shell-less. Marine Biology 157:2341-2345.

Comeau S., Jeffree R., Teyssié J.-L., Gattuso J.-P., 2010. Response of the Arctic pteropod Limacina helicina to projected future environmental conditions. PLoS ONE 5, e11362. doi:10.1371/journal.pone.0011362.

Fiorini, S., Gattuso, J.P., van Rijswijk, P., Middelburg, J. 2010. Coccolithophores lipid and carbon isotope composition and their variability related to changes in seawater carbonate chemistry. Journal of Experimental Marine Biology and Ecology, 394:74-85.

Gattuso J.-P., Gao K., Lee K., Rost B. & Schulz K. G., 2010. Approaches and tools to manipulate the carbonate chemistry. In: Riebesell U., Fabry V. J., Hansson L. & Gattuso J.-P. (Eds.), Guide to best practices for ocean acidification research and data reporting, pp. 41-52. Luxembourg: Publications Office of the European Union.

Gazeau F., Gattuso J.-P., Dawber C., Pronker A. E., Peene F., Peene J., Heip C. H. R. & Middelburg J. J., 2010. Effect of ocean acidification on the early life stages of the blue mussel Mytilus edulis. Biogeosciences 7:2051-2060.

Gomez, F. Moreira, D., Lopez-Garcia, P. 2010. Molecular phylogeny of Noctilucoid Dinoflagellates (Noctilucales, Dinophyceae). Protist, 161:466-478.

Gomez, F. 2010. Changes in the Mediteranean phytoplankton community related to climate warming. in Phytoplankton responses to Mediterranean environmental changes, N° 40, CIESM Workshop Monographs, (F. Briend, Ed.), CIEMS, Monaco, pp. 37-42.

Gomez, F., Moreira, D. Lopez-Garcia, P. 2010. Molecular phylogeny of the dinoflagellates Podolampas and Blepharocysta (Peridiniales, Dinophyceae). Phycologia 49:212-220.

Jiao, N.,  Herndl, G.J., Hansell, D.A.,  Benner, R., Kattner, G., Wilhelm, S.W., Kirchman, D.L., Weinbauer, M.G.,  Luo, T.,  Chen, F., Azam, F. 2010. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nature Microbiology Reviews,8:593-599.

Langdon C., Gattuso J.-P. & Andersson A., 2010. Measurements of calcification and dissolution of benthic organisms and communities. In: Riebesell U., Fabry V. J., Hansson L. & Gattuso J.-P. (Eds.), Guide to best practices for ocean acidification research and data reporting, pp. 213-232. Luxembourg: Publications Office of the European Union.

Lekunberri, I., Lefort, T., Romero, E., Vázquez-Domínguez, E., Marrasé, C. Peters, F., Weinbauer, M.G., Gasol, J.M. 2010. Effects of a dust deposition event on coastal marine microbial abundance and activity, bacterial community structure, and ecosystem function. Journal of Plankton Research 32:381-396.

Liu, J., Weinbauer, M.G., Maier, C., Dai, M., Gattuso, J.-P. 2010. Effect of ocean acidification on microbial diversity and on microbe-driven biogeochemistry and ecosystem functioning. Aquatic Microbial Ecology, 61:291-305.

Lombard, F., Eloire, D., Gobet, A., Legendre, L. Stemmann, L., Dolan, J.R, Sciandra, A., Gorsky, G. 2010. Experimental and modeling evidence of appendicularian-ciliate interactions. Limnology and Oceanography, 55:79-90.

Lombard F., da Rocha R. E., Bijma J., Gattuso J.-P., 2010. Effect of carbonate ion concentration and irradiance on calcification in planktonic foraminifera. Biogeosciences 7:247-255.

Maier, C., Weinbauer, M.G., Pätzold, J. 2010. Stable isotopes reveal limitations in C and N assimilation in the Caribbean reef corals. Marine Ecology Progress Series, 412:103-112.

Nisumaa, A.-M., Pesant, S., Bellerby, R. G. J., Middelburg, J. J., Orr, J. C., Riebesell, U., Tyrrell, T., Wolf-Gladrow, D., Gattuso J.-P., 2010. EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data 2:167-175.

Paul J.H., Weinbauer, M.G. 2010. Detection of lysogeny in aquatic environments. In: Suttle C, Wilhelm SW, Weinbauer MG (eds). Manual of Aquatic Viral Ecology, Limnology and Oceanography Methods.

Pedrotti, M.-L., Peters, F., Beauvais, S., Vidal, M., Egge, J., Jacobsen, A., Marrasé, C. 2010. Effects of nutrients and turbulence on the production of transparent exopolymer particles: a mesocosm study. Marine Ecology Progress Series, 419:57-69.

Robinson, C., D. K. Steinberg, T. R. Anderson, J. Aristegui, C. A. Carlson, J. R. Frost, J. F. Ghiglione, S. Hernandez-Leon, G. A. Jackson, R. Koppelmann, B. Quéguiner, O. Ragueneau, F. Rassoulzadegan, B. H. Robison, C. Tamburini, T. Tanaka, K. F. Wishner, J. Zhang (2010) Mesopelagic zone ecology and biogeochemistry - a synthesis. Deep-Sea Research Part II, 57: 1504-1518.

Rodolfo-Metalpa, R., Martin, S., Ferrier-Pagès, C., Gattuso, J.-P. 2010. Response of the temperate coral Cladocora caespitosa to mid- and long-term exposure to pCO2 and temperature levels projected for the year 2100AD. Biogeosciences, 7:289-300.

Simek, K., Kasaliy, V., Hornak, K., Hahn, M.W., Weinbauer, M.G. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Applied and Environmental Microbiology, 76:1406-1416.

Tanaka, T. 2008. “The structure and function of the lower part of pelagic system: Role of plankton in the microbial food web (in Japanese)” In Ecology of marine plankton. (Supervising editor, A. Taniguchi) Publisher: Seizando-syoten (ISBN 4-425-88391-8). pp. 141-157.

Tichadou, L., Glaizal, M., Armengaud, A., Grossel, H, Lemée R., Kantin, R., Lasalle, J.L., Drouet, G., Rambaud, L., Malfait, P., de Haro, L. 2010. Health impact of unicellular algae of the Ostreopsis genus blooms in the Mediterranean Sea: experience of the French Mediterranean Coast Surveillance Network from 2006 to 2009. Clinical Toxicology, 48: 839-844

Turley C., Eby M., Ridgwell A. J., Schmidt D. N., Findlay H. S., Brownlee C., Riebesell U., Fabry V. J., Feely R. A., Gattuso J.-P., 2010. The societal challenge of ocean acidification. Marine Pollution Bulletin 60:787-792.

Weinbauer M.G., Rowe J.M., Wilhelm, S.W. 2010. Determining rates of virus production in aquatic systems by the virus reduction approach. In: Suttle C, Wilhelm SW, Weinbauer MG (eds). Manual of Aquatic Viral Ecology, Limnology and Oceanography Method.

Weinbauer, M.G., Kerros, M.-E., Motegi, C., Wilhartitz, Rassoulzadegan, F., Torréton, J.-P., Mari, X. 2010. Bacterial community composition and potential controlling mechanisms along a trophic gradient in a barrier reef system. Aquatic Microbial Ecology, 60:15-28.

Winter, C., Bouvier, T., Weinbauer, M.G., Thingstad, T.F. 2010. Trade-offs between competition and defense specialists in unicellular planktonic organisms – the “Killing the Winner” hypothesis revisited. Microbiol. Mol. Biol. Rev., 74:42-57.

Winter, C., Weinbauer, M.G. 2010. RAPD-PCR reveals tight links between viruses and microbes in the bathypelagic zone of the northwestern Mediterranean Sea. Applied and Environmental Microbiology, 76:6724-6732.


Andersen, V., Goutx, M,. Prieur, L., Dolan, J.R. 2009. Short-scale temporal variability of physical, biological and biogeochemical processes in the NW Mediterranean Sea: an introduction. Biogeosciences, 6:453-461.

Bonilla-Findji, O., Herndl, G. J., Gattuso, J.-P., Weinbauer, M. G. 2009. Viral and flagellate control of prokaryotic production and diversity in offshore Mediterranean waters. Applied and Environmental Microbiology 75:4801-4812.

Bonilla-Findji, O. Rochelle-Newall, E., Weinbauer, M.G., Pizay, M.- D., Kerros, M.-E., Gattuso, J.-P. 2009. Effect of seawater- freshwater cross-transplantations on viral dynamics and prokaryotic diversity and production. Aquatic Microbial Ecology, 54:1-11.

Boras, J., Montserrat Sala, M., Vázquez – Domínguez, E., Weinbauer, M.G., Vaqué, D. 2009. Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (NW Mediterranean). Environmental Microbiology, 11:1181-1193.

Comeau, S., Gorsky, G., Jeffree, R., Teyssie, J.-L., Gattuso, J.-P. 2009. Impact of ocean acidification on a key Arctic pelagic mollusc (Limacina helicina). Biogeosciences 6:1877-1882.

Dolan, J.R., Ritchie, M.E., Tunin-Ley, A., Pizay, M.-D. 2009. Dynamics of core and ocasional species in the marine plankton: tintinnid ciliates of the N.W. Mediterranean Sea. Journal of Biogeography, 36:887-895.

Dolan J.R., Mostajir B., Sime-Ngando T. 2009. Rassoulzadegan in Villefranche-sur-Mer and the ‘evolution’ of marine microbial ecology over the last three decades. Aquatic Microbial Ecology, 57:221-225. PDF

Gattuso, J.-P., Lavigne, H. 2009. Technical Note: Approaches and software tools to investigate the impact of ocean acidification. Biogeosciences, 6:2121-2133.

Gao, K., Ruan, Z., Villafane, V.E., Gattuso, J.-P., Helbling, E.W. 2009. Ocean acidification exacerbates the effect of UV radiation on the calcifying phytoplankter Emiliania huxleyi. Limnology and Oceanography, 54:1855–1862.

Gazeau F. 2009. Impact of ocean acidification on marine shellfish. In: Briand, F. (ed) Impacts of acidification on biological, chemical and physical systems in the Mediterranean and Black Seas, CIESM Workshop Monographs, Menton, p 81-87.

Hansson, L., Agis, M., Maier, C., Weinbauer, M.G. 2009. Within and between colony variability of the community composition of bacteria associated to the cold-water coral Madrepora oculata. Marine Ecology Progerss Series, 397:89-102.

Maier, C., Hegeman, J., Weinbauer, M.G., Gattuso, J.-P. 2009. Calcification of the cold-water coral Lophelia pertusa under ambient and reduced pH. Biogeosciences 6: 1875-1901.

Malits, A.,Weinbauer, M.G. 2009. Effect of turbulence and viruses on prokaryotic cell size, production and diversity. Aquatic Microbial Ecology, 54:243-241.

Martin, S., Gattuso, J.-P. 2009.Response of Mediterranean coralline algae to ocean acidification and elevated temperature. Global Change Biology, 15:2089-2100.

Motegi, C., Nagata, T. 2009. Addition of monomeric and polymeric organic substrates alleviates viral lytic pressure on bacterial communities in coastal seawaters. Aquatic Microbial Ecology, 57:343-350. PDF

Motegi, C., Nagata, T., Miki, T., Weinbauer, M.G., Legendre, L., Rassoulzadegan, F. 2009. Viral control of bacterial growth efficiency in marine pelagic environments. Limnology and Oceanography, 54:1901-1910.

Orr J. C., Caldeira K., Fabry V., Gattuso, J.-P., Haugan P., Lehodey P., Pantoja S., Pörtner H.-O., Riebesell U., Trull T., Urban E., Hood M., Broadgate W., 2009. Research priorities for understanding ocean acidification: summary from the second symposium on the ocean in a high-CO2 world. Oceanography 22: 182-189.

Pedrotti, M.-L., Beauvais, S., Kerros, M.-E., Iversen, K., Peters, F. 2009. Bacterial colonization of transparent exopolymeric particles (TEP) in mesocosms under different turbulence intensities and nutrient conditions. Aquatic Microbial Ecology, 55:301-312.

Pizay, M.-D., Lemeé, R., Simon, N., Cras, A.-L., Laugier, J.-P., Dolan, J.R. 2009. Night and day morphologies in a planktonic dinoflagellate. Protist, 160:565-575.

Rollion-Barda, Vigiera, N., Meibom, A., Blamart, D., Reynaud, S., Riccardo Rodolfo-Metalpad, R., Martin, S., Gattuso, J.-P. 2009. Effect of environmental conditions and skeletal ultrastructure on the Li isotopic composition of scleractinian corals. Earth and Planetary Science Letters, 286:63-70.

Raybaud, V., Tunin-Ley, A., Ritchie, M.E., Dolan, J.R. 2008. Similar patterns of community organization characterize distinct groups of different trophic levels in the plankton of the NW Mediterranean Sea. Biogeosciences, 6:431-438.

Richier S.,  Kerros M.-E., De Vargas C., Haramaty L.,  Falkowski P. G., Gattuso J.-P. 2009. Light-dependent transcriptional regulation of genes of biogeochemical interest in the diploid and haploid life cycle stages of Emiliania huxlei. Applied and Environmental Microbiology, 75:3366-3369.

Sandaa, R.A., Gomez-Consarnau, L., Pinhassi, J., Riemann, L., Malits, A., Weinbauer, M.G., Gasol, J.M. , Thingstad, T.F. 2009. Viral control of bacterial biodiversity - Evidence from a nutrient enriched marine mesocosm experiment. Environmental Microbiology, 11:2585-2597.

Simon, N., Cras, A.-L., Foulon, E., Lemée, R. 2009. Diversity and evolution of marine phytoplankton. Comptes Rendus Biologies, 332:159-170.

Tanaka, T. 2009. The structure and function of the mesopelagic microbial loop in the NW Mediterranean Sea. Aquatic Microbial Ecology,57: 351-362

Tanaka, T., Thingstad, T.F., Gasol, J.M., Cardelús, C., Jezbera, J., Sala, M.M., Simek, K., Unrein, F. 2009. Determining the availability of phosphate and glucose for bacteria in P-limited mesocosms of northwestern Mediterranean surface waters. Aquatic Microbial Ecology 56: 81-91

Tunin, A., Ibanez, F., Labat, J.-P., Zingone, A., Lemée R. 2009. Phytoplankton biodiversity and
climate change in NW Mediterranean Sea: changes in dinoflagellate genus Ceratium over the last century. Marine Ecology Progress Series, 375: 85-90.

Weinbauer, M.G., Arrieta, J.-M., Griebler, C., Herndl, G.J. 2009. Enhanced viral production and infection of bacterioplankton during an iron induced phytoplankton bloom in the Southern Ocean. Limnology and Oceanography, 54:774–784.

Weinbauer M.G., Bettarel Y., Cattaneo R., Luef B., Maier C., Motegi C., Peduzzi P., Mari X. 2009. Viral ecology of organic and inorganic particles in aquatic systems: avenues for further research. Aquatic Microbial Ecology, 57:321-341. PDF

Winter C., Kerros, M.-E., Weinbauer, M.G. 2009. Seasonal changes of bacterial and archaeal communities in the dark ocean: evidence from the Mediterranean Sea. Limnology and Oceanography 54:160-170.

Winter C., Kerros, M.-E., Weinbauer, M.G. 2009. Seasonal and depth-related dynamics of prokaryotes and viruses in surface and deep waters of the northwestern Mediterranean Sea. Deep-Sea Research 1 56:1972-1982.


Bonilla-Findji, O., Maltis, A., Lefèvre, D., Rochelle-Newall, E., Lemée, R., Weinbauer, M.G., Gattuso, J.-P. 2008. Viral effects on bacterial respiration, production and growth efficiency : consistent trends in the Southern Ocean and Mediterranean Sea. Deep-Sea Research Part 11, 55:790-800.

Bussaard, C.P.D., Wilhelm, S.W., Thingstad, T.F., Weinbauer, M.G., Bratbak, G., Heldal, M., Kimmance, S.A., Middelboe, M., Nagasaki, K., Paul, J.H., Schroeder, D.C., Suttle, C.A., Vaqué, D., Wommack, K.E. 2008. Global-scale processes with a nanoscale drive: the role of marine viruses. The ISME Journal, 2:575-578.

Danovaro, R., Dell'Anno, A., Corinaldesi, C., Magagnini, M., Noble, R., Tamburini, C., Weinbauer, M.G. 2008. Major viral impact on the functioning of benthic deep-sea ecosystems. Nature, 454: 1084-1087. cover article

Dolan, J.R., Coats, D.W. 2008. Physiological diversity in widely distributed microzooplankton: Digestion in the ciliate Euplotes vannus. pp. 193-206 in 'Biological Oceanography Research Trends', Mertens, L. P. (ed), Nova Publishers.

González N., Gattuso J.-P., Middelburg J. J., 2008. Oxygen production and carbon fixation in oligotrophic coastal bays and the relationship with gross and net primary production. Aquatic Microbial Ecology, 52:119-130.

Hall-Spencer, J.M., Rodolpho-Metalpa, R., Martin, S., Ransome, E., Fine, M., Turner, S.M., Rowley, S.J., Tedesco, D., Buia, M.C. 2008. Volcanic carbon dioxide vents show ecosystem effects of ocean acidification. Nature, 454: 96-99.

Larsen, A., Tanaka, T., Zubkov, M.V.,Thingstad, T.F. 2008. Two approaches for P affinity measurements of specific osmotroph populations using cell-sorting flow cytometry: benefits and limitations. Limnology and Oceanography: Methods 6: 355-363

Mangialajo L., Bertolotto R., Cattaneo-Vietti R., Chiantore M., Grillo C., Lemée R., Melchiorre N., Moretto P., Povero P., Ruggieri N. 2008. The toxic benthic dinoflagellate Ostreopsis ovata: Quantification of proliferation along Genoa coastline (Italy, NW Mediterranean Sea) in summer 2006. Marine Pollution Bulletin, 56:1209-1214.

Martin S., Gazeau F., Orr J. C., Gattuso J.-P., 2008. Ocean acidification and its consequences [L'acidification des ocean et ses conséquences]. French Earth System Science Partnership Newsletter 21:5-16.

Martin S., Rodolfo-Metalpa R., Ransome E., Rowley S., Gattuso J.-P., Hall-Spencer J., 2008. Effects of naturally acidified seawater on seagrass calcareous epibionts. Biology Letters 4:689-692.

Middelboe M., Jacquet S., Weinbauer, M.G. 2008. Viruses in freshwater ecosystems: an introduction to the exploration of viruses in new aquatic habitats. Freshwater Biology, 53:1069-1075

Parada, V., Baudoux, A.-C., Sintes, E., Weinbauer, M.G., Herndl, G.J. 2008. Dynamics of newly produced virioplankton in the North Sea. The ISME Journal, 2:924-936.

Smith P., Nabuurs G.-J., Janssens I., Reis S., Marland G., Soussana J.-F., Christensen T., Heath L., Apps M., Alexeyev V., Fang J., Gattuso J.-P., Guerschman J., Huang Y., Jobbagy E., Murdiyarso D., Ni J., Nobre A., Peng C., Walcroft A., Wang S., Pan Y., Zhou G., 2008. Sectoral approaches to improve regional carbon budgets. Climatic Change 88: 209-249.

Tanaka, T., Thingstad, T.F., Løvdal, T., Grossart, H.-P., Larsen, A., Allgaier, M., Meyerhöfer, M., Schulz, K.G., Wohlers, J., Zöllner, E., Riebesell, U. 2008. Implication of reduced phosphate availability for phytoplankton and bacteria at higher pCO2 levels in a mesocosm study. Biogeosciences 5: 669-678

Thingstad, T. F., Bellerby, R.G.J., Bratbak, G., Børsheim, K.Y., Egge, J.K., Heldal, M., Larsen, A., Neill, C., Nejstgaard, J., Norland, S., Sandaa, R.-A., Skjoldal, E.F., Tanaka, T., Thyrhaug, R., Töpper, B. 2008. Counterintuitive carbon-to-nutrient coupling in an Arctic pelagic ecosystem. Nature 455: 387-391

Verity, P.G., Steele, J.H., Thingstad, T.F., Rassoulzadegan, F. 2008. The marine pelagic ecosystem: perspectives on humanity's role in the future. pp 311-318 in Polunin, N.V.C. (ed) Aquatic Ecosystems: Trends and Global Prospects, Cambridge University Press.

Weinbauer, M.G. 2008. Viruses- the overlooked players. Nova Acta Leopoldina, 356:79-83.

Winter, C., Moeseneder, M., Herndl, G.J., Weinbauer M.G. 2008. Influence of geographic distance, depth, temperature, and viruses on prokaryotic communities in the eastern tropical Atlantic Ocean. Microbial Ecology 56: 383-389.


Agis, M., Granda A., Dolan, J.R. 2007. A cautionary note: examples of possible microbial community dynamics in dilution grazing experiments. Journal of Experimental Marine Biology and Ecology, 341:176-183.

Arrieta, J.M., Weinbauer, M.G., Herndl, G.J. 2007. Response to 'interpreting the results of oceanic mesocosm enrichment experiments-caveats and lessons from limnology and coastal ecology'. Limnology and Oceanography, 52:916-918.

Bensoussan N., Gattuso J.-P. 2007. Primary production and calcification of a temperate marine ecosystem dominated by calcareous macroalgae (Marseilles, NW Mediterranean Sea). Marine Ecology Progress Series, 334:37-45.

Blackford J., Turley C., Widdicombe S., Orr J., Gattuso J.-P. 2007. Ocean acidification- The other half of the CO2 problem. EUR-OCEANS Fact Sheet 7.

Blain, S. , Quéguiner, B.,  Armand, L., Belviso, S., Bombled, B.,  Bopp, L., Bowie, A., Brunet, C., Brussaard, C., Carlotti, F., Christaki, U., Corbière, A., Durand, I., Ebersbach, F., Fuda, J.-L., Garcia, N., Gerringa, L., Griffiths, B., Guigue, C., Guillerm, C., Jacquet, S., Jeandel, C., Laan, P., Lefèvre, D., Monaco, C. L., Malits, A., Mosseri, J., Obernosterer, I., Park, Y.-H., Picheral, M., Pondaven, P., Remeny, T., Sandron, V., Sarthou, G., Savoye, N., Scouarnec, L., Souhaut, M., Thuiller, D., Timmermans, K., Trull, T., Uitz, J., van Beek, P., Veldhuis, M., Vincent, D., Viollier, E., Lilita Vong, L., Wagener, T.  2007. Effect of natural iron fertilization on carbon sequestration in the Southern Ocean. Nature 446: 1070-1075.

Caldeira, K., Archer, D., Barry, J. P., Bellerby, R., Brewer, P., Cao, L., Dickson, A. G., Doney, S. C., Elderfield, H., Fabry, V. J., Feely, R.A., Gattuso J.-P., Haugan, P.M., Hoegh-Guldberg, O., K. J. A., Kleypas, J.A., Langdon, C., Orr, J.C., Ridgwell, A., Sabine, C.L., Seibel, B.A., Shirayama, Y., Turley, C., Watson A.J., Zeebe, R.E. 2007. Comment on “Modern-age buildup of CO2 and its effects on seawater acidity and salinity”. Geophysical Research Letters, 34, L18608, doi:10.1029/2006GL027288.

Dolan, J.R. 2007. Le paradoxe du plancton. in 'Voir l'Invisible', Fox-Keller, E., Gex, J.-P. (eds), Omniscience, pp 126-127.

Dolan, J.R. 2007. On Kofoid's trail: marine biological laboratories in Europe and their life histories. Limnology and Oceanography Bulletin, 16:73-76.

Dolan, J.R., Ritchie, M.R., Ras, J. 2007. The neutral community structure of planktonic herbivores, tintinnid ciliates of the microzooplankton, across the SE Pacific Ocean. Biogeosciences 4: 297-310.

Fernand L., Brewer P. G., Pörtner H. O., Gazeau F., Gattuso J.-P., Marubini F., Kildow J., Barry J., Kröger S., Dulvy N. K., Laing I., Blackford J., Widdicombe S., Hardman Mountford N., Bellerby R., Studd S., Suggett D. & Borsheim K., 2007. Report of the Workshop on the
Significance of Changing Ocean CO2 and pH in Shelf Sea Ecosystems, 31 p.
London: DEFRA and ICES-CIEM.

Gavrilova, N., Dolan, J.R. 2007. A note on species lists and ecosystem shifts: Black Sea tintinnids, ciliates of the microzooplankton. Acta Protozoologica, 46: 279-288.

Gazeau F., Middelburg J. J., Loijens M., Vanderborght J.-P., Pizay M.-D., Gattuso J.-P., 2007. Planktonic primary production in estuaries: a comparison of the 14C, O2 and 18O methods. Aquatic Microbial Ecology 46:95-106.

Gazeau F., Quiblier C., Jansen J.M., Gattuso J.-P., Middelburg J.J., Heip C.H.R. 2007. Impact of elevated CO2 on shellfish calcification. Geophysical Research Letters, 34, L07603.doi:10.1029/2006GL028554.

Løvdal, T.,  Tanaka, T., Thingstad, T.F. 2007. Algal – bacterial competition for phosphorus from dissolved DNA, ATP and orthophosphate in a mesocosm experiment. Limnology and Oceanography 52: 1407-1419

Mari, X., Kerros, M.-E., Weinbauer, M.G. 2007. Virus attachment to transparent exopolymeric particles along trophic gradients in the southwest lagoon of New Caledonia. Applied and Environmental Microbiology, 73:524-5252.

Martin, S., Clavier, J.,  Chauvaud, L., Thouzeau,  G. 2007. Community metabolism in temperate maerl beds: I. Carbon and carbonate fluxes. Marine Ecology Progress Series 335:19-29.

Martin, S., Clavier, J.,  Chauvaud, L., Thouzeau,  G. 2007. Community metabolism in temperate maerl beds: II. Nutrient fluxes. Marine Ecology Progress Series 335: 31-41.

Martin, S., Thouzeau, G., Richard, M., Clavier, J., Chauvaud, L., Jean, F. 2007. Benthic community respiration in areas impacted by the invasive mollusk, Crepidula fornicata L. Marine Ecology Progress Series, 347:51-60.

Parada, V., Sintes, E., van Aken, H.M., Weinbauer, M.G., Herndl, G.J. 2007. Viral abundance, decay and diversity in the meso- and bathypelagic waters of the North Atlantic. Applied and Environmental Microbiology, 73:4429-4438.

Simek, K., Weinbauer, M.G., Hornak, K., Jezbera, J., Nedoma, J., Dolan, J.R. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology, 9:789-800.

Tanaka, T., Zohary, T., Krom, M.D., Law, C.S., Pitta, P., Psarra, S., Rassoulzadegan, F., Thingstad, T.F., Tselepides, A., Woodward, E.M.S., Flaten, G.A.F., Skjoldal, E.F., Zodiatis, G. 2007. Microbial community structure and function in the Levantine basin of the Eastern Mediterranean. Deep-Sea Research I 54: 1721-1743.

Thingstad, T.F., Havskum, H., Zweifel,U.-L., Berdalet, E., Sala, M. M. , Peters, F., Alcaraz, M., Scharek, R., Perez, M., Jacquet, S., Fonnes Flaten, G.A., Dolan, J.R., Marrasé, C., Rassoulzadegan, F., Hagström, A., Vaulot, D. 2007. Ability of a "minimum" microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose and Si. Journal of Marine System, 64:15-34.

Rochelle-Newall E. J., Winter C., Barrón C., Borges A. V., Duarte C. M., Gazeau F., Middelburg J. J., Pizay M.-D., Gattuso J.-P., 2007. An artificial neural network analysis of factors controlling ecosystem metabolism in estuarine and coastal marine environments. Ecological Applications, 77:s185-s196.

Tunin, A., Labat, J.-P., Gasparini S., Mousseau L., Lemée R. 2007. Annual cycle and diversity of species and infraspecific taxa of Ceratium (Dinophyceae) in the Ligurian Sea, NW Mediterranean. Journal of Phycology, 43: 43:1149-1163.

Weinbauer, M.G., Hornak, K., Jezbera, J., Nedoma, J., Dolan, J.R., Simek, K., 2007. Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology, 9:777-788.

Weinbauer, M.G., Agis, M. Bonilla-Findji, O., A. Malits, A., Winter, C. 2007. Bacteriophage in the environment. in S. Mc Grath and D. van Sinderen (eds) "Bacteriophage: Genetics and Molecular Biology", pp 61-91, Horizon Press.

Weinbauer, M.G., Rassoulzadegan, F. 2007.  Extinction of microbes - evidence and potential consequences. Endangered Species Research, 3:205-215.

Zhang, R., Weinbauer, M.G., Qian, P.-Y. 2007. Viruses and flagellates sustain apparent richness and reduce biomass accumulation  of bacterioplankton in coastal marine waters. Environmental Microbiology, 9:3008-3018.


Beauvais, S., Pedrotti, M.-L., Egge, J., Iversen, K., Marrasé, C., 2006. Effects of turbulence on TEP dynamics under contrasting nutrient conditions: implications for aggregation and sedimentation processes. Marine Ecology Progress Series, 323:47-57.

Borges A. V., Schiettecatte L. -S., Abril G., Delille B. & Gazeau F.  2006. Carbon dioxide in European coastal waters. Estuarine, Coastal and Shelf Science, 70: 375-387

Dolan, J.R. 2006. Microbial Biogeography? Journal of Biogeography, 33:199-200.

Dolan, J.R. 2006. Re-discovered beauty - new images for old descriptions - tropical tintinnids of the genus Xystonellopsis (Ciliophora, Tintinnia). Protist, 157, 251-253.

Dolan, J.R. 2006. Review of 'Microbial Ecology: An Evolutionary Approach' by J. V. McArthur. Journal of Plankton Research 28:803.

Dolan, J.R. Jacquet, S., Torreton, J.-P., 2006. Comparing taxonomic and morphological biodiversity of tintinnids (planktonic ciliates) of New Caledonia. Limnology and Oceanography, 51:950-958.

Dolan, J.R. , Lemée, R., Gasparini, S., Mousseau, L., Heyndrickx, C., 2006. Probing diversity in the plankton: using patterns in tintinnids (planktonic marine ciliates) to identify mechanisms. Hydrobiologia, 555: 143-157.

Gattuso, J.-P., Gentili, B., Duarte, C.M., Kleypas, J.A., Middelburg, J.J., Antoine, D., 2006. Light availability in the coastal ocean: impact on the distribution of benthic photosynthetic organisms and their contribution to primary production. Biogeosciences 3:489-513.

Lee, O.O., Lau, S.C.K., Tsoi, M.M.Y., Li, X., Plakhotnikova, I. , Dobretsov, S., Wu, M.C.S., Wong, P.-K., Weinbauer, M.G., Qian, P.-Y. 2006. Shewanella irciniae sp. nov., a novel member of the family Shewanellaceae, isolated from the marine sponge Ircinia dendroides in the Bay of Villefranche, Mediterranean Sea. International Journal of Systematic and Evolutionary Microbiology, 56: 2871-2877.

Parada, V., Herndl, G.J., Weinbauer, M.G., 2006. Viral burst size of heterotrophic prokaryotes in aquatic systems. Journal of the Marine Biological Association of the United Kingdom, 86:613-621.

Schiettecatte L. -S., Gazeau F., Van der Zee C., Brion N., Borges A. V.  2006. Time series of the partial pressure of carbon dioxide (2001-2004) and net ecosystem production off the Belgian coast. Geochemistry Geophysics Geosystems Vol. 7, Q06009, DOI 10.1029/2005GC001161

Simek, K., Hornak, K., Jezbera, J., Nedoma, J., Vrba, J., Straskrabova, V., Macek, M., Dolan, J.R., Hahn, M., 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology, 8:1613-1624.

Tanaka, T., Henriksen, P., Lignell, R., Olli, K., Seppälä, J., Tamminen, T., Thingstad, T.F. 2006. Specific affinity for phosphate uptake and specific alkaline phosphatase activity as diagnostic tools for detecting P-limited phytoplankton and bacteria. Estuaries and Coasts 29: 1226-1241

Thingstad, T.F., Law, C.S., Krom, M.D., Mantoura, R.F.C., Pitta, P., Psarra, S., Rassoulzadegan, F., Tanaka, T., Wassmann, P., Riser, C.W., Zohary, T. 2006. Response to comment on 'The nature of phosphorus limitation in the ultraoligotrophic eastern Mediterranean'. Science 313:1748.

Wienbauer, M.G., Christen, R. Höfle, M.G., 2006. The response of Vibrio- and Rhodobacter-related populations in the NW Mediterranean SEa to additions of dissolved organic matter, phages and dilution. Microbial Ecology, 51:336-344.


Cermeno, P., Maranon, E., Rodriguez, J., Fernandez, E., 2005. Size dependence of coastal phytoplankton photosynthesis under vertical mixing conditions. Journal of Plankton Research 27:473-483.

Delille B., Harlay, J., Zondervan, I., Jacquet, S., Chou, L., Wollast, R., Bellerby R. G. J., Frankignoulle, M., Borges, A. V., Riebesell, U., Gattuso, J.-P., 2005. Response of primary production and calcification to changes of pCO2 during experimental blooms of the coccolithophorid Emiliania huxleyi. Global Biogeochemical Cycles, GB2023. doi:10.1029/2004GB002318.

Dolan, J.R. 2005. An introduction to the biogeography of aquatic microbes. Aquatic Microbial Ecology 41: 39-48.

Dolan, J.R., McKeon, K. 2005. The reliabilty of grazing rate estimates from dilution experiments: Have we over-estimated rates of organic carbon consumption by microzooplankton? Ocean Science 1:1-7.

Dolan, J.R. 2005. Marine ecology- different measures of biodiversity. Nature 433:E9.

Dolan, J.R., Rassoulzadegan, F., Caron, D.A. 2005. The first decade of Aquatic Microbial Ecology (1995 -2005): Evidence for gradualism or punctuated equilibrium? Aquatic Microbial Ecology 30:3-6.

Engel, A., Zondervan, I., Aerts, K., Beaufort, L., Benthien, A., Chou, L., Delille, B., Gattuso, J.-P., Harlay, J., Heemann, C., Hoffmann, L., Jacquet, S., Nejstgaard, J., Pizay, M.-D., Rochelle-Newall, E., Schneider, U., Terbrüggen, A., Riebesell, U., 2005. Testing the direct effect of CO2 concentration on a bloom the coccolithophorid Emiliania huxleyi in mesocosm experiements. Limnology and Oceanography 50: 493-507.

Gattuso, J.-P., Dawson, N., Duarte, C. M. & Middelburg, J. J. 2005. Patterns of publication effort in coastal biogeochemistry: a bibliometric survey (1971-2003). Marine Ecology Progress Series 294: 9-22.

Gazeau, F., Duarte, A. C., Gattuso, J.-P., Barrón, C., Gazeau, F., Navarro, N., Ruíz, S., Prairie, Y. T., Calleja, M., Delille, B., Frankignoulle, M., Borges, A., 2005. Whole-system metabolism and CO2 flux in a Mediterranean Bay dominated by seagrass beds (Palma Bay, NW Mediterranean). Biogeosciences 2: 43-60.

Gazeau, F., Borges A. V., Barrón, C., Duarte, C.M., Iversen, N., Middelburg, J.J., Delille, B., Pizay, M.-D., Frankignoulle, M., Gattuso, J.-P., 2005. Net ecosystem metabolism in a micro-tidal estuary (Randers Fjord, Denmark): evaluation of methods. Marine Ecology Progress Series 301:23-41.

Gazeau, F., Gattuso J.-P., Middelburg, J.J., Barrón, C., Duarte, C.M., Schiettecatte, L.-S., Pizay, M.-D., Frankignoulle, M., Borges, A.V., 2005. Planktonic and whole system metabolism in a nutrient-rich estuary (The Sheldt estuary). Estuaries 28:868-883.

Flaten G.A.F., Skjoldal, E.F., Krom, M.D., Law, C.S., Mantoura, R.F.C., Pitta, P., Psarra, S., Tanaka, T., Tselepides, A., Woodward, E.M.S., Zohary, T., Thingstad, T.F. 2005. Studies of the microbial P-cycle during a Lagrangian phosphate-addition experiment in the Eastern Mediterranean. Deep-Sea Research II 52: 2944-2960.

Herut, B., Zohary, T., Krom, M.D., Mantoura, R.F.C., Pitta, P., Psarra, S., Rassoulzadegan, F., Tanaka, T., Thingstad, T.F. 2005. Response of East Mediterranean surface water to Saharan dust: On-board microcosm experiment and field observations. Deep-Sea Research II 52: 3024-3040.

Kleypas, J.A., Buddemeier, R.W., Eakin, C.M., Gattuso, J.-P., Guinotte, J., Hoegh-Guldberg, O., Iglesias-Prieto, R., Jokiel, P.L., Langdon, C., Skirving, O.W., Strong, A. E., 2005. Comment on «Coral reef calcification and climate change: The effect of ocean warming». Geophysical Research Letters L08601. doi:10.1029/2004GL022329.

Kress, N., Thingstad, T.F., Pitta, P., Psarra, S., Tanaka, T., Zohary, T., Groom, S., Herut, B., Mantoura, R.F.C., Polychronaki, T., Rassoulzadegan, F., Spyres, G. 2005. Effect of P and N addition to oligotrophic Eastern Mediterranean waters influenced by near-shore waters: A microcosm experiment. Deep Sea Research II 52: 3054-3073.

Krom, M.D., Thingstad, T.F., Brenner, S., Carbo, P., Drakopoulos, P., Fileman, T.W., Flaten, G.A.F., Groom, S., Herut, B., Kitidis, V., Kress, N., Lawe, C.S., Liddicoat, M.I., Mantoura, R.F.C., Pasternak, A., Pitta, P., Polychronaki, T., Psarra, S., Rassoulzadegan, F., Skjoldal, E.F., Spyres, G., Tanaka, T., Tselepides, A., Wassmann, P., Riser, C.W., Woodward, E.M.S., Zodiatis, G., Zohary, T. 2005. Summary and overview of the CYCLOPS P addition Lagrangian experiment in the Eastern Mediterranean. Deep-Sea Research II 52: 3090-3108.

Mari, X., Rassoulzadegan, F., Brussaard, C.P.D., Wassmann, P. 2005. Dynamics of transparent exopolymeric particles (TEP) production by Phaeocystis globosa under N- or P-limitation: a controlling factor of the retention/export balance. Harmful Algae 4: 895-914.

Méjananelle, L., Laureillard, J., Rassoulzadegan, F. 2005. Polar lipid biomarkers of free-living bacteria from oligotrophic marine waters. Biogeochemistry 72:365-383.

Middelburg, J.J., Duarte, C. M., Gattuso, J.-P., 2005. Respiration in coastal benthic communities. In: del Giorgio P. A. & Williams L. P. J. (eds), Respiration in Aquatic Ecosystems, pp. 206-224. Oxford: Oxford University Press.

Pitta, P., Stambler, N., Tanaka, T., Zohary, T., Tselepides, A., Rassoulzadegan, F. 2005. Biological response to P addition in the Eastern Mediterranean Sea. The microbial race against time. Deep-Sea Research II 52: 2961-2974.

Psarra, S., Zohary, T., Krom, M.D., Mantoura, R.F.C., Polychronaki, T., Stambler, N., Tanaka, T., Tselepides, A., Thingstad, T.F. 2005. Phytoplankton response to a Lagrangian phosphate addition in the Levantine Sea (Eastern Mediterranean). Deep-Sea Research II 52: 2944-2960.

Rassoulzadegan, F., del Giorgio, P.A. 2005. Into the future. Aquatic Microbial Ecology 40: 205-205.

Tanaka, T., Rassoulzadegan, F., Thingstad, T.F., 2005. Analysing the trophic link between the mesopelagic microbial loop and zooplankton from observed depth profiles of protozoa and bacteria. Biogeosciences 2: 9-13.

Thingstad, T.F., Krom, M.D., Mantoura, R.F.C., Flaten, G.A.F., Groom, S., Herut, B., Kress, N., Law, C.S., Pasternak, A., Pitta, P., Psarra, S., Rassoulzadegan, F., Tanaka, T., Tselepides, A., Wassmann, P., Woodward, E.M.S., Riser, C.W., Zodiatis, G., Zohary, T. 2005. The nature of phosphorus limitation in the ultraoligotrophic eastern Mediterranean. Science 309:1068-1071.

Winter, C. Smit, A., Herndl, G.J., Weinbauer, M.G. 2005. Linking bacterial richness with viral abundance and prokaryotic activity. Limnology and Oceanography 50: 968-977.

Winter, C., Smit A., Szoeke-Dénes, Herndl, G.J., Weinbauer, M.G. 2005. Modelling viral impact on bacterioplancton in the North Sea using artificial neural networks. Environmental Microbiology 68: 768-773.

Zohary, T., Herut, B., Krom, M.D., Mantoura, R.F.C., Pitta, P., Psarra, S., Rassoulzadegan, F., Stambler, N., Tanaka, T., Thingstad, T.F., Woodward, E.M.S. 2005. P-limited bacteria but N and P co-limited phytoplankton in the Eastern Mediterranean - a microcosm experiment. Deep-Sea Research II 52: 3011-3023.


Agogue, H., Casamayor, E.O., Joux, F., Obernosterer, I., Dupuy, C., Lantoine, F., Catala, P., Weinbauer, M.G., Reinthaler, T., Herndl, G.J., Lebaron, P. 2004. Comparison of samplers for the biological characterisation of the sea surface microlayer. Limnology and Oceanography: Methods 2:213-225.

Arrieta, J.M., Weinbauer, M.G., Lute, C., Herndl, G.J 2004. Response of bacterioplankton to iron fertilzation in the Southern Ocean. Limnology and Oceanography 49: 799-808.

Bettarel, Y., Sime-Ngando, T., Amblard, C., Dolan, J.R. 2004. Viral activity in two contrasting lake ecosystems. Applied and Environmental Microbiology, 70: 2941-2951.

Borges A. V., Delille B., Schiettecatte L. -S., Gazeau F., Abril G. & Frankignoulle M.  2004. Gas transfer velocities of CO2 in three European estuaries (Randers Fjord, Scheldt and Thames).Limnology and Oceanography, 49: 1630-1641

Borges A. V., Vanderborght J. -P., Schiettecatte L. -S., Gazeau F., Ferrón-Smith S., Delille B. & Frankignoulle M.  2004. Variability of the gas transfer velocity of CO2 in a macrotidal estuary (The Scheldt). Estuaries, 2: 593-603

Buddemeier, R.W., Gattuso J.-P. 2004. Les coraux hissent le drapeau blanc. Les Dossiers de La Recherche 17: 62-67.

Engel, A., Delille, B., Jacquet, S., Riebesell, U., Rochelle-Newall, E.J., Terbrüggen, A. Zondervan, I., 2004. Transparent exopolymer particles and dissolved organic carbon production by Emiliania huxleyi exposed to different CO2 concentrations: a mesocosm experiment. Aquatic Microbial Ecology 34: 93-104.

Engel, A., Thoms, S., Riebesell, U., Rochelle-Newall, E., Zondervan, I., 2004. Polysaccharide aggregation as a potential sink of marine dissolved organic carbon. Nature 428: 929-931.

Gazeau, F., Smith, S.V., Gentili, B., Frankignoulle, M., Gattuso, J.-P., 2004. The European coastal zone: characterization and first assessment of ecosystem metabolism. Estuarine, Coastal and Shelf Science 60: 673-694.

Maltis, A., Peters, F., Bayer-Giraldi, M., Marrasé, C., Zoppini, A., Guadayol, O., Alcraz, M. Effects of small-scale turbulence on bacteria: a matter of size. Microbial Ecology 48:287-299.

Mari, X., Dam, H.G. 2004. Production, concentration and isolation of transparent exopolymeric particles (TEP) using paramagnetic functionalized microspheres. Limnology and Oceanography: Methods 2:13-24

Mari, X., Rassoulzadegan, F. 2004. Role of TEP in the microbial food web structure. I. Grazing behavoir of a bactivorous pelagic ciliate. Marine Ecology Progress Series 279:13-22.

Mari, X., Rassoulzadegan, F. 2004. Role of TEP in the microbial food web structure. II Influence on the ciliate community. Marine Ecology Progress Series, 279:23-32.

Riisgard, H.U., Barth, H., Larsen, P.S., Roepstorif, P., Boero, F., Dolan, J.R., Sommer, U., Zupo, V., Vermaat, J., Anderson, T.R., Knieb, R.T., Lomstein, B.A., Jenkinson, I., Shumway, S.E. 2004. Peer review: journal articles versus research proposals. Marine Ecology Progress Series 277:301-309.

Reynaud S., Hemming G., Juillet-Leclerc A., Gattuso, J.-P., 2004. Effect of pCO2 and temperature on the boron isotopic composition of the zooxanthellate coral Acropora sp. Coral Reefs 23:539-546.

Rochelle-Newall, E., Delille, B., Frankignoulle, M., Gattuso, J.-P., Jacquet, S., Riebesell, U., Terbrüggen, A., Zondervan, I., 2004. Chromophoric dissolved organic matter in experimental mesocosms maintained under different pCO2 levels. Marine Ecology Progress Series 272: 25-31.

Rochelle-Newall, E., Pizay, M.-D., Middelburg, J.J., Boschker, H.T.S., Gattuso J.-P., 2004. Degradation of riverine dissolved organic matter by seawater bacteria. Aquatic Microbial Ecology 37: 9-22.

Veuger, B., Middelburg, J., Boschker, H.T.S., Nieuwenhuize, J., Van Rijswijk, P., Rochelle-Newall, E. J., Navarro, N. 2004. Microbial uptake of dissolved inorganic and organic nitrogen in the Randers Fjord. Estuarine, Coastal and Shelf Science 61: 507-515

Tanaka T., Rassoulzadegan, F. 2004. Vertical and seasonal variations of bacterial abundance and production in the mesopelagic layer of the NW Mediterranean Sea: bottom-up and top-down controls. Deep Sea Research I 51: 531-544.

Tanaka, T., Rassoulzadegan, F., Thingstad, T.F. 2004. Orthophosphate uptake by heterotrophic bacteria, cyanobacteria, and autotrophic nanoflagellates in Villefranche Bay , northwestern Mediterranean : Vertical, seasonal, and short-term variations of the competitive relationship for phosphorus Limnology and Oceanography 49: 1063-1072

Weinbauer, M.G. 2004. Ecology of prokaryotic viruses. FEMS Microbiology Reviews 28:127-181.

Weinbauer, M.G., Rassoulzadegan, F. 2004. Are viruses driving prokaryotic diversification and diversity? Environmental Microbiology 6: 1-11.

Winter, C.A., Herndl, G.J., Weinbauer, M.G. 2004. Diel cycles of viral infection of bacterioplankton in the North Sea . Aquatic Microbial Ecology 35:207-216

Winter, C., Smit, A., Herndl, G.J., Weinbauer, M.G. 2004. Impact of virioplankton on archaeal and bacterial community richness in seawater batch cultures. Applied and Environmental Microbiology 70: 804-813.

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Beauvais, S., Pedrotti, M.-L., Villa, E., Lemée, R. 2003. Transparent exopolymer particle (TEP) dynamics in relation to trophic and hydrological conditions in the NW Mediterranean Sea. Marine Ecology Progress Series 262: 97-109.

Dolan, J.R., Sall, N., Metcalfe, A., Gasser, B. 2003. Effects of turbulence on feeding and growth in a marine oligotrich ciliate. Aquatic Microbial Ecology 31: 183-192.

Flaten, G.A.F., Castberg, T., Tanaka, T., Thingstad, T.F. 2003. Interpretation of nutrient-enrichment bioassays by looking at sub-populations in a marine bacterial community. Aquatic Microbial Ecology 33: 11-18.

Havskum, H., Thingstad, T. F., Scharek, R., Peters, F., Berdalet, E., Sala, M. M., Alcaraz, M., Bangsholt, J.C., Zweifel, U.-L., Hagström, Å., Perez, M., Dolan, J.R. 2003. Silicate and labile DOC interfere in structuring the microbial food web via algal-bacterial competition for mineral nutrients: results of a mesocosm experiment. Limnology and Oceanography 48: 129-140.

Heip, C., Brandt, A., Gattuso, J.-P., Antia, A., Berger, W. H., Boissonnas, J., Burkill, P., d'Ozouville, L., Graf, G., Herndl, G. J., Patching, P., Reise, K., Riou, G., Simó, R., Smetacek, V., Wassmann, P. 2003. Ecosystem functioning and biodiversity. In: Wefer, G., Lamy, F., Mantoura F. (eds), Marine Science Frontiers for Europe, pp. 289 -302. Berlin : Springer-Verlag.

Herndl, G.J., Weinbauer, M.G. 2003. Marine microbial food webs structure and function. In: Wefer, G., Lamy, F., Mantoura, F. (eds), Marine Science frontiers for Europe, pp. 265-277. Berlin: Springer-Verlag.

Nunes J. P., Ferreira J. G., Gazeau F., Lencart-Silva J., Zhang X. L., Zhu M. Y. & Fang J. G.  2003. A model for sustainable management of shellfish polyculture in coastal bays. Aquaculture, 219: 257-277.

Reynaud, S., Leclercq, N., Romaine-Lioud, S., Ferrier-Pagès, C., Jaubert, J., Gattuso J.-P. 2003. Interacting effects of CO2 partial pressure and temperature on photosynthesis and calcification in a scleractinian coral. Global Change Biology 11: 1660-1668.

Sciandra, A., Harlay, J., Lefèvre, D., Lemée, R., Rimmelin, P., Denis, M., Gattuso J.-P. 2003. Response of the coccolithophorid Emiliania huxleyi to elevated pCO2 under nitrate limitation. Marine Ecology Progress Series 261: 111-122.

Simek, K., Hornak, K., , Masin, K., Christaki, U., Nedoma, J., Weinbauer, M.G., Dolan, J.R. 2003. Effect of resource enrichment on grazed and ungrazed bacterioplankton communities of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Tanaka, T., Rassoulzadegan, F. 2003. Vertical distribution of pico- and nano-sized DAPI Yellow Particles (DYP) in the NW Mediterranean Sea. Oceanologica Acta 26: 209-213.

Tanaka, T., Rassoulzadegan, F., Thingstad, T.F. 2003. Measurements of phosphate affinity constants and phosphorus release rates from the microbial food web in Villefranche Bay, northwestern Mediterranean. Limnology and Oceanography 48: 1150-1160.

Weinbauer, M.G., Brettar, I., Höfle, M. G. 2003. Lysogeny and virus-induced mortality of bacterioplankton in surface, deep and anoxic waters. Limnology and Oceanography 48: 1457-1465.

Weinbauer, M.G., Christaki, U., Nedoma, J., Simek, K. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 137-144.

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Betteral, Y., Dolan, J.R., Hornak, M., Lemée, R., Masin, K., Pedrotti, M. L., Rochelle-Newall, E., Simek K., Sime-Ngando, T. 2002. Hot, cold and missing links in a planktonic microbial community. FEMS Microbiology Ecology 42: 451-462.

Dolan, J.R., Claustre, H., Carlotti, F., Plounevez, S., Moutin, T., 2002. Microzooplankton diversity: relationships of tintinnid ciliates with resources, competitors and predators from the Atlantic Coast of Morocco to the Eastern Mediterranean. Deep-Sea Research 1 49: 1217-1232.

Falugi, C., Diaspro, A. Angelini, C., Pedrotti, M.L., Raimondo, M., Roberto, M., 2002. Three-dimensional mapping of cholinergic molecules by confocal laser scanning microscopy in sea urchin larvae. Micron 33: 233-329.

Gattuso J.-P. 2002. Marine biogeochemical cycles: effects on climate and response to climate change. In: Nihoul J.C.J. (Editor), ' Encyclopedia of life support systems'. Oxford: EOLSS Publishers Ltd.

Gattuso, J.-P., Peduzzi, S., Pizay, M.-D., Tonolla, M. 2002. Changes in bacterial community composition during measurements of microbial and community respiration. Journal of Plankton Research 24: 1197-1206.

Leclercq, N., Gattuso, J.-P., Jaubert, J. 2002. Primary production, respiration, and calcification of a coral reef mesocosm under increased CO2 partial pressure. Limnology and Oceanography 47: 558-564.

Lemée, R., Rochelle-Newall, E., Van Wambeke, F., Pizay, M.-D., Rinaldi, P., Gattuso J.-P. 2002. Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea. Aquatic Microbial Ecology 29: 227-237.

Migné, A., Davoult, D., Spilmont, N., Menu, D., Boucher, G., Gattuso J.-P., Rybarczyk H. 2002. A closed-chamber CO2 flux method for estimating intertidal primary production and respiration in emersed conditions. Marine Biology 140: 865-869.

Peters, F., Marassé, C., Havskum, H., Rassoulzadegan, F., Dolan, J.R., Alcarez, M., Gasol J. M. 2002. Turbulence and the microbial food web: effects on bacterial losses to predation and on community structure. Journal of Plankton Research 24: 321-331.

Rochelle-Newall, E.J., Fisher, T. R. 2002. Production of chromophoric dissolved organic matter in marine and estuarine environments: role of phytoplankton. Marine Chemistry 77: 7-21.

Rochelle-Newall, E.J., Fisher, T.R. 2002. Chromophoric dissolved organic matter and dissolved organic carbon in Chesapeake Bay. Marine Chemistry 77: 23-41.

Simek, K., Nedoma, J., Pernthaler, J., Posch, T., Dolan, J.R. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Autonie van Leeuwenhoek 81: 435-463.

Tanaka, T., Rassoulzadegan, F. 2002. Full-depth profile (0-2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: vertical partitioning of microbial trophic structures. Deep-Sea Research II 49: 2093-2107.

Weinbauer, M.G. 2002. Marine Viruses: small is powerful. In: Bright, M., Dworschak, P.C., Stachowisch, M. (eds), 'The Vienna School of Marine Biology - A Tribute to Jörg Ott', pp. 183-200. Wien, Austria: Facultas Universitätsverlag.

Weinbauer, M.G., Fritz, I., Wenderoth, D.F., Höfle, M.G. 2002. High efficient extraction of total RNA and DNA from bacterioplankton suitable for functional and structural analyses. Applied and Environmental Microbiology 68: 1082-1087.

Weinbauer M.G., Wenderoth, D. 2002. Microbial diversity and ecosystem functions - the unmined riches. Electronic Journal of Biotechnology 5: available here.

Weinbauer, M.G., Winter, C., Höfle, M.G. 2002. Reconsidering transmission electron microscopy based estimates of viral infection of bacterioplanktonstudies using conversion factors derived from natural communities. Aquatic Microbial Ecology 27: 103-11.

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Gattuso, J.-P., Buddemeier, R.W. 2001. Coral reefs: an ecosystem subject to multiple environmental threats. In: Mooney, H.A., Canadell, J. (eds), 'The Earth system: Biological and ecological dimensions of global environmental change 2.' Wiley, New-York, pp. 232-241.

Lee, K.-Y., Fisher, T.R., Rochelle-Newall, E.J. 2001. Modelling the hydrochemistry of the Choptank River basin using GWLF and Arc/Info: 2. Model application. Biogeochemistry 56: 311-348.

Mari, X., Beauvais, S., Lemée, R., Pedrotti, M.-L. 2001. Non-Redfield C:N ratio of transparent exopolymeric particles in the northwestern Mediterranean Sea. Limnology and Oceanography 46: 1831-1836.

Dolan, J.R., Gallegos, C. L., 2001. Estuarine diversity of tintinnids (planktonic ciliates). Journal of Plankton Research 23: 1009-1027.

Kleypas, J.A., Buddemeier, R.W., Gattuso, J.-P. 2001. The future of coral reefs in an age of global change. International Journal of Earth Sciences 90: 426-437.

Simek, K., Pernthaler, J., Weinbauer, M.G., Hornak, K., Dolan, J.R., Nedoma, J., Masin, M., Amann, R., 2001. Changes in bacterial community composition, dynamics and viral mortality rates associated with enhanced flagellate grazing in a meso-eutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Reynaud-Vaganay, S., Juillet-Leclerc, A., Jaubert, J., Gattuso, J.-P. 2001. Effect of light on skeletal ∂13C and ∂18O, and interaction with photosynthesis, respiration and calcification in two zooxanthellate scleractinian corals. Palaeogeography, Palaeoclimatology, Palaeoecology 175: 393-404.

Thingstad, T.F., Kress, M., Herut, B., Zohary, T., Pitta, P., Psarra, S., Polychronaki, T., Spyres, G., Mantoura, F., Tanaka, T., Rassoulzadegan, F., Krom, M., 2001. Mixed indications of mineral nutrient limitation in a microcosm experiment using Eastern Mediterranean surface water. Rapp. Comm. Int. Mer. Médit. 36: 213.

Weinbauer, M.G., Höfle, M.G. 2001. Quantification of nucleic acids from aquatic environments by using green-fluorescent dyes and microtiter plates. In: Akkermans, A., van Elsas, J., de Bruijn, F. (eds), 'Molecular Microbial Ecology Manual, 5th Supplement 2.1.3'. Kluwer Academic Publishers, Dordrecht.


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Achouak, W., Sutra, L., Heulin, T., Meyer, J.M., Fromin, N., Degraeve, S., Christen, R., Gardan, L. 2000. Pseudomonas brassicacearum sp nov and Pseudomonas thivervalensis sp nov., two root-associated bacteria isolated from Brassica napus and Arabidopsis thaliana. Internatiol Journal of Systematic and Evolutionary Microbiology 50: 9-18.

Dolan, J.R., Pérez, M.T. 2000. Costs and benefits of mixotrophy: the case of marine oligotrichs. Freshwater Biology 45: 227-238.

Dolan, J.R 2000. Tinitinnid ciliate diversity in the Mediterranean Sea: Longitudinal patterns related to water column structure in late spring-early summer. Aquatic Microbial Ecology 22: 69-78.

Dolan, J.R., Gallegos, C.L., Moigis, A., 2000. Dilution effects on microzooplankton in dilution grazing experiments. Marine Ecology Progress Series 200: 127-139.

Girard, J.-P., Szpunar, J., Pedrotti, M.-L., Pesando, D, 2000. Toxicity of tri-n-butyltin to sea urchin eggs and larvae: Relation to bioaccumulation at the nanomolar level. Environmental Toxicology and Chemistry 19: 1272-1277.

Ferrier-Pagès, C., Gattuso, J.-P., Dallot, S., Jaubert, J. 2000. Effect of nutrient enrichment on growth and photosynthesis of the zooxanthellate coral Stylophora pistillata. Coral Reefs 19: 103-113.

Gattuso, J.-P., Buddemeier, R.W., 2000. Ocean biogeochemistry: calcification and CO2. Nature 407: 311-312.

Buddemeier, R.W., Gattuso, J.-P. 2000. Mauvais air pour les récifs coralliens. La Recherche 334: 52-56.

Gattuso, J.-P., Reynaud-Vaganay, S., Furla, P., Romaine-Lioud, S., Jaubert, J., Bourge I., Frankignoulle, M. 2000. Calcification does not stimulate photosynthesis in the zooxanthellate scleractinian coral Stylophora pistillata. Limnology and Oceanography 45: 246­250.

Ivanova, E.P., Romanenko, L.A., Matte, M.H., Matte, G.R., Lysenko, A.M., Simidu, U., Kita-Tsukamoto, K., Sawabe, T., Vysotskii, M.V., Frolova, G.M., Mikhailov, V., Christen, R., Colwell, R.R. 2000. Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov and emendation of description. International Journal of Systematic and Evolutionary Microbiology 51: 1071-1078.

Kleypas, J.A., Buddemeier, R.W., Gattuso, J.-P, 2001. The future of coral reefs in an age of global change. International Journal of Earth Sciences 90: 426-437.

Leclercq, N., Gattuso, J.-P., Jaubert J. 2000. CO2 partial pressure controls the calcification rate of a coral community. Global Change Biology 6: 329-334.

Pérez, M.T., Dolan, J.R., Vidussi, F., Fukai E., 2000. Diel vertical distribution of planktonic ciliates within the surface layer of the NW Mediterranean (May 1995). Deep-Sea Research I 47: 479-503.

Sawabe, T., Tanaka, R., Iqbal, M.M., Tajima, K., Ezura, Y., Ivanova, E.P., Christen, R. 2000.  Assignment of Alteromonas elyakovii KMM 162(T) and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov and the extended description of the species. International Journal of Systematic and Evolutionary Microbiology 50: 265-271.



Achituv, Y., Pedrotti, M.-L., 1999. Active vs. passive feeding in suspension feeders: costs and gains in the case of porcelain crabs. Marine Ecology Progress Series 184: 161-169.

Achouak, W., Christen, R., Barakat, M., Martel, M.H., Heulin, T. 1999. Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique. International Journal of Systematic Bacteriology 49: 787-794

Arin, L., Berdalet, E., Marrasé, C., Estrada, M., Guixa-Boixereu, Dolan, J.R. 1999. Particulate DNA and protein relative to microorganism biomass and detritus in the Catalano-Balearic Sea (NW Mediterranean) during stratification. Journal of Plankton Research 21: 1299-1316.

Cariou J.-B., Dolan, J.R., Dallot S. 1999. A preliminary study of tintinnid diversity in the N. W. Mediterranean. Journal of Plankton Research 21: 1065-1075.

Christaki, U., Jacquet, S., Dolan, J.R., Vaulot D., Rassoulzadegan, F. 1999. Growth and grazing on Prochlorococcus and Synechococcus by two marine ciliates. Limnology and Oceanography 44: 52-61.

Christaki, U., Van Wambeke, F., Dolan, J.R., 1999. Nanoflagellates (mixotrophs, heterotrophs and autotrophs) in the oligotrophic eastern Mediterranean: standing stocks, bacterivory and relationships with bacterial production. Marine Ecology Progress Series 181: 297-307.

Dolan, J.R., Claustre, H., Vidussi, F. 1999. Planktonic ciliates in the Mediterranean Sea: longitudinal trends. Deep-Sea Research I 46: 2025-2039.

Dolan, J.R., Simek K., 1999. Diel periodicity in Synechococcus and grazing by heterotrophic nanoflagellates: analysis of food vacuole contents. Limnology and Oceanography 44: 1565-1570.

Falugi, C., Facondini, L., Angelini, C., Pedrotti, M. L. 1999. Onset of a cholinergic-like system during neurogenesis of the sea urchin, Paracentrotus lividus. In: Carnevali, D.M. (ed.), Echinoderm Biology. Rotterdam: Balkema.

Ferrier-Pagès, C., Gattuso, J.-P., Jaubert J., 1999. Effect of small variations in salinity on the rates of photosynthesis and respiration of the zooxanthellate coral Stylophora pistillata. Marine Ecology Progress Series 181: 309-314.

Gattuso, J.-P., Allemand D., Frankignoulle, M., 1999. Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: a review on interactions and control by carbonate chemistry. American Zoologist 39: 160-183.

Gattuso, J.-P., Frankignoulle, M., Smith, S. V. 1999. Measurement of community metabolism and significance of coral reefs in the CO2 source-sink debate. Proceedings of the National Academy of Science U.S.A. 96: 13017-13022.

Kleypas, J.A., Buddemeier, R.W., Archer, D., Gattuso, J.-P., Langdon, C., Opdyke, B.N. 1999. Geochemical consequences of increased atmospheric CO2 on coral reefs. Science 284: 118-120.

Leclercq, N., Gattuso, J.-P., Jaubert J. 1999. Measurement of primary production and respiration in open-top mesocosms: application to a coral reef mesocosm. Marine Ecology Progress Series 177: 299-304.

Pedrotti, M.-L., Lemée, R. 1999. Effect of microalge treated with natural toxins on nutrition and development of filter-feeding sea-urchin larvae. Marine Environmental Research 48: 177-192.

Pelegrí, S.P., Christaki, U., Dolan, J.R., Rassoulzadegan, F. 1999. Particulate and dissolved organic carbon production by the heterotrophic nanoflagellate Pteridomonas danica Patterson and Fenchel. Microbial Ecology 37: 276-284.

Pelegrí, S. P.,Dolan, J.R., Rassoulzadegan, F., 1999. Use of high temperature calatlytic oxidation (HTCO) to measure carbon content of microorganisms. Aquatic Microbial Ecology 16: 273-280.

Reynaud-Vaganay, S., Gattuso, J.-P., Cuif, J.-P., Jaubert, J., Juillet-Leclerc, A. 1999. A novel culture technique for scleractinian corals: application to investigate changes in skeletal 18O as a function of temperature. Marine Ecology Progress Series 180: 121-130.

Shick, J.M., Romaine-Lioud, S., Ferrier-Pagès, C., Gattuso, J.-P. 1999. Ultraviolet-B radiation stimulates shikimate pathway-dependent accumulation of mycosporine-like amino acids in the coral Stylophora pistillata despite decreases in its population of symbiotic dinoflagellates. Limnology and Oceanography 44: 1667-1682.

Simek, K., Kojecká, P., Nedoma, J., Hartman, P., Vrba, J., Dolan, J.R. 1999. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634-1644.

Tanaka, T., Taniguchi, A. 1999. Predator-prey eddy in heterotrophic nanoflagellate-bacteria relationships in a bay on the northeastern Pacific coast of Japan. Marine Ecology Progress Series 179: 123-134.

Thingstad ,T F., Pérez, M., Pelegrí, S., Dolan, J.R., Rassoulzadegan, F. 1999. Trophic control of bacterial growth in microcosms containing a natural community from northwest Mediterranean surface waters. Aquatic Microbial Ecology 18: 145-156.

Thingstad, T.F., Rassoulzadegan, F. 1999. Conceptual models for the biogeochemical role of the photic zone microbial food web, with particular reference to the Mediterranean Sea. Progress in Oceanography 44: 271-286.


Amade, P., Lemée, R. 1998. Chemical defence of the Mediterranean alga Caulerpa taxifolia: variations in caulerpenyne production. Aquatic Toxicology 43: 287-300.

Boucher, G., Clavier, J., Hily, C., Gattuso, J.-P. 1998. Contribution of soft-bottoms to the community metabolism (primary production and calcification) of a barrier reef flat (Moorea, French Polynesia). Journal of Experimental Marine Biology and Ecology 225: 269-283.

Caparroy, P., Pérez, M., Carlotti, F. 1998. Feeding behavior of Centropages typicus in calm and turbulent conditions. Marine Ecology Progress Series 168: 109-118.

Christaki, U., Dolan, J.R., Pelegrí, S.P., Rassoulzadegan, F. 1998. Consumption of picoplankton-size particles by marine ciliates: effects of physiological state of the ciliate and particle quality. Limnology and Oceanography 43: 458-464.

Christaki, U., Van Wambeke, F., Dolan, J.R., Bianchi, M., Rassoulzadegan, F. 1998. Importance of phagotrophic pigmented flagellates (mixotrophs) in the oligotrophic eastern Mediterranean, a first approach. Rapp. Comm. Int. Mer Médit., 35:344-345.

Christaki, U., Gaudy, R., Kerambrun, P. 1998. A study of the effects of migratory zooplankton on microbial populations in surface waters of the NW Mediterranean. Journal of Experimental Marine Biology and Ecology 225: 173-183.

Dolan, J.R., Simek, K. 1998. Ingestion and digestion of an autotrophic picoplankter, Synechococcus, by a heterotrophic nanoflagellate, Bodo saltans. Limnology and Oceanography 43: 1740-1746.

Ferrier-Pagès, C., Allemand, D., Gattuso, J.-P., Jaubert, J., Rassoulzadegan, F. 1998. Microheterotrophy in the zooxanthellate coral Stylophora pistillata: effect of light and prey density. Limnology and Oceanography 43: 1639-1648.

Ferrier-Pagès, C., Gattuso, J.-P. 1998. Biomass, production and grazing rates of pico- and nanoplankton in coral reef waters (Miyako Island, Japan). Microbial Ecology 35: 46-57.

Ferrier-Pagès, C., Gattuso, J.-P., Cauwet, W., Jaubert, J. Allemand, D. 1998. Release of dissolved organic carbon and nitrogen by the zooxanthellates coral Galaxea fascicularis. Marine Ecology Progress Series 172: 265-274.

Ferrier-Pagès, C., Karner, M., Rassoulzadegan F. 1998. Release of dissolved amino acids by flagellates and ciliates grazing on bacteria. Oceanologica Acta 21: 485-494.

Gattuso, J.-P., Frankignoulle, M., Bourge, I., Romaine, S., Buddemeier, R. W. 1998. Effect of calcium carbonate saturation of seawater on coral calcification. Global and Planetary Change 18: 37-46.

Gattuso, J.-P., Frankignoulle, M., Wollast, R. 1998. Carbon and carbonate metabolism in coastal aquatic ecosystems. Annual Review of Ecology and Systematics 29: 405-434.

Le Pogam, S., Le Chapois, D., Christen, R., Dubois, F., Barin, F., Goudeau, A. 1998. Hepatitis C in a hemodialysis unit: Molecular evidence for nosocomial transmission. Journal of Clinical Microbiology 36: 3040-304.

Le Pogam, S., Dubois, F., Christen, R., Raby, C., Cavicchini, A., Goudeau, A. 1998. Comparison of DNA enzyme immunoassay and line probe assays (Inno-LiPA HCV I and II) for hepatitis C virus genotyping. Journal of Clinical Microbiology 36: 1461-1463.

Migné, A., Davoult D., Gattuso, J.-P. 1998. Calcium carbonate production of a dense population of the brittle star Ophiothrix fragilis (Echinodermata: Ophiuroidea): role in the carbon cycle of a temperate coastal ecosystem. Marine Ecology Progress Series 173: 305-308.

Mostajir, B., Fagerbakke, K.M., Heldal, M., Thingstad, T.F., Rassoulzadegan, F. 1998. Elemental composition of individual pico- and nano-sized marine detrital particles in the Northwestern Mediterranean Sea. Oceanologica Acta 21: 589-596.

Mostajir, B., Bustillos-Guzman, J., Claustre, H., Rassoulzadegan, F. 1998. Pigment dynamics associated with the grazing of a ciliate and flagellate feeding on a cyanobacterium. Oceanologica Acta 21: 581-588.

Pelegri, S., Christaki, U., Dolan, J.R., Rassoulzadegan, F. 1998. The use of Escherichia coli as food source for protozoa in excretion experiments: preliminary results. Rapp. Com. Inter. Mer Médit., 35:358-359.

Sawabe, T., Sugimura, I., Ohtsuka, M., Nakano, K., Tajima, K., Ezura, Y., Christen, R. 1998. Vibrio halioticoli sp. nov., a non-motile alginolytic marine bacterium isolated from the gut of the abalone Haliotis discus hannai. International Journal of Systematic Bacteriology 48: 573-580.

Sawabe T., Makino, H., Tatsumi, M., Nakano, K., Tajima, K., Iqbal ,M.M., Yumoto, I., Ezura, Y., Christen, R. 1998. Pseudoalteromonas bacteriolytica sp. nov., a marine bacterium that is the causative agent of red spot disease of Laminaria japonica. International Journal of Systematic Bacteriology 48: 769-774.

Thingstad, T.F., Zweifel, U.-L., Rassoulzadegan, F. 1998. P limitation of heterotrophic bacteria and phytoplankton in the northwest Mediterranean. Limnology and Oceanography 43: 88-94.

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Dolan, J.R. 1997. Phosphorus and ammonia excretion by planktonic protists: Trends associated with cell size and growth rate. Marine Geology 139:109-122.

Dolan, J.R., Simek, K. 1997. Processing of ingested matter in Strombidium sulcatum, a marine ciliate. Limnology and Oceanography 42:393-397.

Klein, C., Dolan, J.R., Rassoulzadegan, F. 1997. Experimental examination of the effects of rainwater on microbial communities in the surface layer of the N. W. Mediterrean Sea. Marine Ecology Progress Series, 158:41-50.

Pérez, M. T., Dolan, J.R., Fukai, E. 1997. Planktonic oligotrich ciliates in the N. W. Mediterrean: growth rates and consumption by copepods. Marine Ecology Progress Series 155:89-101.

Tanaka, T., Fujita, N., Taniguchi, A. 1997. Predator-prey eddy in heterotrophic nanoflagellate-bacteria relationship in coastal marine environment: A new scheme for predator-prey associations. Aquatic Microbial Ecology 13: 249-256.

Thingstad, T.F., Hagstrom, A., Rassoulzadegan, F. 1997. Accumulation of degradable DOC in surface waters: Is it caused by a malfunctioning microbial loop? Limnology and Oceanography 42:398-404.

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Christaki, U., Belviso, S., Dolan, J.R., Corn, M. 1996. Assessment of the role of planktonic copepods and ciliates in the release to solution of DMSP in the N. W. Mediterranean Sea. Marine Ecology Progress Series 141:119-127.

Legendre, L., Rassoulzadegan, F. 1996. Food-web mediated export of biogenic carbon in oceans: Hydrodynamic control. Marine Ecology Progress Series 145: 179-193.

Pedrotti, M.L., Marchi, B., Lemée, R. 1996. Effects of Caulerpa taxifolia secondary metabolites on the embryogenesis, larval development and metamorphosis of the sea urchin Paracentrotus lividus. Oceanologica Acta 19: 255-262.

Pedrotti, M.-L, Fenaux, L. 1996.  Distribution of echinoderm larval populations in the geostrophic frontal jet of the eastern Alboran Sea. Oceanologica Acta 19: 385-395.

Pedrotti, M.L., Hill, A.E. 1996. Dispersal and recruitment processes.  Oceanologica Acta 19: 472-473.

Pérez, M. T., Dolan, J.R., Rassoulzadegan, F., Mostajir, B. 1996. Predation on marine picoplankton populations examined with an "add-in" approach. Journal of Plankton Research 18 : 635-641.

Thingstad, T. F., Dolan, J.R., Fuhrman, J. A. 1996. Loss rate of an oligotrophic bacterial assemblage as measured by 3H-thymidine and 32PO 4: good agreement and near- balance with production. Aquatic Microbial Ecology 10:29-36.


Dolan, J.R., Thingstad, T.F., Rassoulzadegan, F. 1995. Phosphate transfer between microbial size-fractions in Villefranchje Bay (NW Mediterranean Sea), France in autumn 1992. Ophelia 41: 71-85.

Dolan, J.R., Marrasé, C. 1995. Planktonic ciliate distribution relative to a deep chlorophyll maximum: Catalan sea, NW Mediterranean, June 1993
Deep-Sea Research Part I 42: 1965-1987.

Karner, M., Rassoulzadegan, F. 1995. Extracellular enzyme activity - indications for high short-term variability in a coastal marine ecosystem. Microbial Ecology 30: 143-156.

Legendre, L., Rassoulzadegan, F. 1995. Plankton and nutrient dynamics in marine waters. Ophelia 41: 153-172.

Mostajir, B., Dolan, J.R., Rassoulzadegan, F. 1995. A simple method for the quantification of a class of labile marine pico- and nano-sized detritus: DAPI Yellow Particles (DYP). Aquatic Microbial Ecology 9: 259-266.

Mostajir, B., Dolan, J.R., Rassoulzadegan, F. 1995. Seasonal variations of pico- and nano-detrital particles (DAPI Yellow Particles, DYP) in the Ligurian Sea (NW Mediterranean). Aquatic Microbial Ecology 9: 267-277.

Pedrotti, M.-L. 1995. Food selection (size and flavor) during development of echinoderm larvae. Invertebrate Reproduction and Development 2: 29-39 .

Rassoulzadegan, F., Dolan, J.R. 1995. Aquatic Microbial Ecology- an editorial. Aquatic Microbial Ecology 9: 2-2.

Thingstad, T.F., Rassoulzadegan, R. 1995. Nutrient limitations, microbial food webs, and biological C-pumps - suggested interactions in a P-limited Mediterranean. Marine Ecology Progress Series 117: 299-306.








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